Package: copa

Version: 1.6.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check copa_1.6.0.tar.gz

RetCode: 0

Time: 48.5 seconds

Status: OK

CheckDir: copa.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/copa.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'copa/DESCRIPTION' ... OK
* this is package 'copa' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'copa' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
pSum: no visible binding for global variable 'mat'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating copa-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating copa-manual.tex ... OK
* checking copa-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/copa.Rcheck


---------- Making package copa ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making copa.d from copa.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c copa.c -o copa.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i copa_res.rc -o copa_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o copa.dll copa.def copa.o copa_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package copa for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'copa'
     Formats: text html latex example chm 
  copa                              text    html    latex   example chm
  copa.package                      text    html    latex           chm
  copaFilter                        text    html    latex           chm
  copaPerm                          text    html    latex           chm
  copaTable                         text    html    latex   example chm
  getans                            text    html    latex           chm
  pSum                              text    html    latex           chm
  perm.mat                          text    html    latex           chm
  plotCopa                          text    html    latex   example chm
  scatterPlotCopa                   text    html    latex   example chm
  summaryCopa                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\copa.Rcheck\00_pkg_src\copa\chm\copa.chm


Compile time: 0 minutes, 0 seconds
12	Topics
18	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\copa.Rcheck\00_pkg_src\copa\chm\copa.chm, 29,557 bytes
Compression decreased file by 8,264 bytes.
  adding MD5 sums

* DONE (copa)