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bgafun 1.0.0
Iain Wallace
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: bgafun
Version: 1.0.0
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build bgafun
RetCode: 0
Time: 79.6 seconds
Status: OK
PackageFile: bgafun_1.0.0.tar.gz

Command output

* checking for file 'bgafun/DESCRIPTION' ... OK
* preparing 'bgafun':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'bgafun' ...
** R
** data
** inst
** help
Note: unmatched right brace in 'add_pseudo_counts' on or after line 9
Note: unmatched right brace in 'run_between_pca' on or after line 8
 >>> Building/Updating help pages for package 'bgafun'
     Formats: text html latex example 
  Calculate_Row_Weights             text    html    latex   example
  Henikoff_weights                  text    html    latex
  LDH                               text    html    latex
  LDH.aap                           text    html    latex
  LDH.aap.ave                       text    html    latex
  LDH.amino                         text    html    latex
  LDH.amino.gapless                 text    html    latex
  LDH.amino.pseudo                  text    html    latex
  LDH.groups                        text    html    latex
  Weight_Amino                      text    html    latex
  add_pseudo_counts                 text    html    latex   example
  amino_counts                      text    html    latex
  average_cols_aap                  text    html    latex   example
  bgafun                            text    html    latex   example
  calculate_pseudo                  text    html    latex
  convertAAP.package                text    html    latex
  convert_aln_AAP                   text    html    latex   example
  convert_aln_amino                 text    html    latex   example
  convert_amino.package             text    html    latex
  convert_seq_AAP                   text    html    latex
  convert_seq_amino                 text    html    latex
  create_colnames_AAP               text    html    latex
  create_colnames_amino             text    html    latex
  create_probab                     text    html    latex
  create_profile                    text    html    latex
  create_profile_strings            text    html    latex   example
  pseudo_counts                     text    html    latex
  remove_gaps                       text    html    latex
  remove_gaps_groups                text    html    latex   example
  run_between_pca                   text    html    latex   example
  sum_20_aln                        text    html    latex
  sum_20_cols                       text    html    latex
  sum_aln                           text    html    latex
  top_residues_2_groups             text    html    latex   example
** building package indices ...
* DONE (bgafun)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'bgafun_1.0.0.tar.gz'