Package: affyio

Version: 1.6.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=affyio.buildbin-libdir affyio_1.6.0.tar.gz

RetCode: 0

Time: 24.1 seconds

Status: OK

PackageFile: affyio_1.6.0.zip

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/affyio.buildbin-libdir

Using auto-selected zip options ''

---------- Making package affyio ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making fread_functions.d from fread_functions.c
making read_abatch.d from read_abatch.c
making read_bpmap.d from read_bpmap.c
making read_cdf_xda.d from read_cdf_xda.c
making read_cdffile2.d from read_cdffile2.c
making read_celfile_generic.d from read_celfile_generic.c
making read_generic.d from read_generic.c
gcc-sjlj  -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c fread_functions.c -o fread_functions.o
fread_functions.c:301: warning: 'swap_uint_32' defined but not used
gcc-sjlj  -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c read_abatch.c -o read_abatch.o
gcc-sjlj  -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c read_bpmap.c -o read_bpmap.o
read_bpmap.c: In function 'ReadBPMAPHeader':
read_bpmap.c:76: warning: unused variable 'version_number_int'
gcc-sjlj  -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c read_cdf_xda.c -o read_cdf_xda.o
read_cdf_xda.c: In function 'isPM':
read_cdf_xda.c:614: warning: implicit declaration of function 'toupper'
gcc-sjlj  -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c read_cdffile2.c -o read_cdffile2.o
read_cdffile2.c:363: warning: 'token_ends_with' defined but not used
gcc-sjlj  -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c read_celfile_generic.c -o read_celfile_generic.o
read_celfile_generic.c: In function 'read_genericcel_file_intensities':
read_celfile_generic.c:591: warning: unused variable 'fread_err'
read_celfile_generic.c:589: warning: unused variable 'cur_index'
read_celfile_generic.c:588: warning: unused variable 'j'
read_celfile_generic.c: In function 'read_genericcel_file_stddev':
read_celfile_generic.c:641: warning: unused variable 'fread_err'
read_celfile_generic.c:639: warning: unused variable 'cur_index'
read_celfile_generic.c:638: warning: unused variable 'j'
read_celfile_generic.c: In function 'read_genericcel_file_npixels':
read_celfile_generic.c:695: warning: unused variable 'fread_err'
read_celfile_generic.c:693: warning: unused variable 'cur_index'
read_celfile_generic.c:692: warning: unused variable 'j'
read_celfile_generic.c: In function 'generic_get_masks_outliers':
read_celfile_generic.c:757: warning: unused variable 'fread_err'
read_celfile_generic.c:755: warning: unused variable 'cur_index'
read_celfile_generic.c:754: warning: unused variable 'j'
read_celfile_generic.c: In function 'generic_apply_masks':
read_celfile_generic.c:849: warning: unused variable 'fread_err'
read_celfile_generic.c:843: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_intensities':
read_celfile_generic.c:1488: warning: unused variable 'fread_err'
read_celfile_generic.c:1486: warning: unused variable 'cur_index'
read_celfile_generic.c:1485: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_stddev':
read_celfile_generic.c:1539: warning: unused variable 'fread_err'
read_celfile_generic.c:1537: warning: unused variable 'cur_index'
read_celfile_generic.c:1536: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_npixels':
read_celfile_generic.c:1593: warning: unused variable 'fread_err'
read_celfile_generic.c:1591: warning: unused variable 'cur_index'
read_celfile_generic.c:1590: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzgeneric_get_masks_outliers':
read_celfile_generic.c:1658: warning: unused variable 'fread_err'
read_celfile_generic.c:1656: warning: unused variable 'cur_index'
read_celfile_generic.c:1655: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzgeneric_apply_masks':
read_celfile_generic.c:1750: warning: unused variable 'fread_err'
read_celfile_generic.c:1744: warning: unused variable 'j'
gcc-sjlj  -std=gnu99 -IE:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c read_generic.c -o read_generic.o
read_generic.c: In function 'determine_MIMETYPE':
read_generic.c:389: warning: control reaches end of non-void function
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.1-bioc/R/include  -i affyio_res.rc -o affyio_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o affyio.dll affyio.def fread_functions.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_generic.o affyio_res.o  -LE:/biocbld/bbs-2.1-bioc/R/bin -LE:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -lz   -lR
  ... DLL made
  installing DLL
  installing R files
  preparing package affyio for lazy loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affyio'
     Formats: text html latex example chm 
  check.cdf.type                    text    html    latex           chm
  read.cdffile.list                 text    html    latex           chm
  read.celfile                      text    html    latex           chm
  read.celfile.header               text    html    latex           chm
  read.celfile.probeintensity.matri text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.3088\affyio\chm\affyio.chm





Compile time: 0 minutes, 0 seconds

6	Topics

11	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.3088\affyio\chm\affyio.chm, 19,569 bytes

Compression increased file by 2,053 bytes.

  adding MD5 sums

packaged installation of package 'affyio' as affyio_1.6.0.zip
* DONE (affyio)