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Package 213/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
SNPchip 1.2.1 Robert Scharpf Last Changed Date: 2007-10-03 06:02:47 -0700 Last Changed Rev: 27724 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: SNPchip |
Version: 1.2.1 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check SNPchip_1.2.1.tar.gz |
RetCode: 0 |
Time: 209.4 seconds |
Status: OK |
CheckDir: SNPchip.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/SNPchip.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'SNPchip/DESCRIPTION' ... OK * this is package 'SNPchip' version '1.2.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'SNPchip' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE centromere: no visible binding for global variable 'chromosomeAnnotation' chromosomeSize: no visible binding for global variable 'chromosomeAnnotation' .drawCentromere: no visible binding for global variable 'chromosomeAnnotation' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating SNPchip-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating SNPchip-manual.tex ... OK * checking SNPchip-manual.tex ... OK
SNPchip.Rcheck/00install.out:
* Installing *source* package 'SNPchip' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: oligoClasses Creating a new generic function for "summary" in "SNPchip" ** help >>> Building/Updating help pages for package 'SNPchip' Formats: text html latex example DEPRECATED-classes text html latex ParESet-class text html latex example ParSnpCallSet-class text html latex example ParSnpCopyNumberSet-class text html latex example ParSnpSet-class text html latex example addFeatureData-method text html latex allPlots-methods text html latex alleleA text html latex example alleleB text html latex example calculateCopyNumber text html latex centromere text html latex example chromosome text html latex chromosomeAnnotation text html latex example chromosomeSize text html latex example coerce-methods text html latex cytoband text html latex example dbSnpId text html latex example enzyme text html latex example fragmentLength text html latex example getPar-methods text html latex getSnpAnnotation text html latex example hapmap text html latex example initialize-methods text html latex plotCytoband text html latex example plotSnp text html latex example position text html latex sample.snpset text html latex example selectSomeIndex text html latex example show-methods text html latex showSummary text html latex example smoothSnp text html latex example snpPar text html latex example summary-methods text html latex unsplitSnpSet text html latex example updateObject-methods text html latex ** building package indices ... * DONE (SNPchip)