Package: SAGx

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build SAGx

RetCode: 0

Time: 26.8 seconds

Status: OK

PackageFile: SAGx_1.12.0.tar.gz

* checking for file 'SAGx/DESCRIPTION' ... OK
* preparing 'SAGx':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'SAGx' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c minigsea.c -o minigsea.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c newboot.c -o newboot.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c samrocNboot.c -o samrocNboot.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SAGx.so minigsea.o newboot.o samrocNboot.o   -F/Library/Frameworks/R.framework/.. -framework R 
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c minigsea.c -o minigsea.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c newboot.c -o newboot.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c samrocNboot.c -o samrocNboot.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SAGx.so minigsea.o newboot.o samrocNboot.o   -F/Library/Frameworks/R.framework/.. -framework R 
** R
** inst
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'SAGx'
     Formats: text html latex example 
  Fstat                             text    html    latex   example
  GSEA.mean.t                       text    html    latex
  JT.test                           text    html    latex   example
  R2BASE                            text    html    latex
  R2mim                             text    html    latex
  Xprep                             text    html    latex
  Xprep.resid                       text    html    latex
  clin2mim                          text    html    latex
  cluster.q                         text    html    latex
  estimatep0                        text    html    latex
  fetchSignal                       text    html    latex   example
  firstpass                         text    html    latex   example
  fom                               text    html    latex
  fp.fn                             text    html    latex
  gap                               text    html    latex   example
  list.experiments                  text    html    latex   example
  list.intersection.p               text    html    latex
  mat2TeX                           text    html    latex
  myclus                            text    html    latex   example
  normalise                         text    html    latex
  one.probeset.per.gene             text    html    latex
  outlier                           text    html    latex   example
  p0.mom                            text    html    latex
  pava.fdr                          text    html    latex
  pava                              text    html    latex   example
  rank.genes                        text    html    latex
  rank.trend                        text    html    latex   example
  rsd.test                          text    html    latex
  samroc.result-class               text    html    latex
  samrocn                           text    html    latex
  samrocnboot                       text    html    latex   example
  union.of.pways                    text    html    latex   example
** building package indices ...
* DONE (SAGx)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SAGx_1.12.0.tar.gz'