Package: Ringo

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check Ringo_1.2.0.tar.gz

RetCode: 0

Time: 95.8 seconds

Status: OK

CheckDir: Ringo.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/Ringo.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'Ringo/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Ringo' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Ringo' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Ringo-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Ringo-manual.tex ... OK
* checking Ringo-manual.tex ... OK

* Installing *source* package 'Ringo' ...
** libs
** arch - i386
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c mmedian.cpp -o mmedian.o
g++-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ringo.so mmedian.o   -F/Library/Frameworks/R.framework/.. -framework R 
** arch - ppc
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c mmedian.cpp -o mmedian.o
g++-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ringo.so mmedian.o   -F/Library/Frameworks/R.framework/.. -framework R 
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: limma
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: RColorBrewer
** help
 >>> Building/Updating help pages for package 'Ringo'
     Formats: text html latex example 
  Ringo-internal                    text    html    latex
  arrayImage                        text    html    latex   example
  asExprSet                         text    html    latex   example
  autocorr                          text    html    latex   example
  chipAlongChrom                    text    html    latex   example
  computeRunningMedians             text    html    latex   example
  compute_gc                        text    html    latex   example
  corrPlot                          text    html    latex   example
  findPeaksOnSmoothed               text    html    latex   example
  ftr2xys                           text    html    latex   example
  newPeak                           text    html    latex   example
  nimblegenNorm                     text    html    latex
  peakByThreshold                   text    html    latex   example
  peakClass                         text    html    latex   example
  plotAutocorr                      text    html    latex   example
  plot_peak                         text    html    latex   example
  preprocess                        text    html    latex   example
  readNimblegen                     text    html    latex   example
  relatePeaks                       text    html    latex   example
  sliding_quantile                  text    html    latex   example
** building package indices ...
* DONE (Ringo)