Package: Harshlight

Version: 1.8.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build Harshlight

RetCode: 0

Time: 19.8 seconds

Status: OK

PackageFile: Harshlight_1.8.0.tar.gz

* checking for file 'Harshlight/DESCRIPTION' ... OK
* preparing 'Harshlight':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'Harshlight' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c Harshlight.c -o Harshlight.o
Harshlight.c: In function `norm':
Harshlight.c:1316: warning: unused variable `sorted2'
Harshlight.c: In function `report_overall_header':
Harshlight.c:1467: warning: unknown conversion type character `)' in format
Harshlight.c:1471: warning: unknown conversion type character `)' in format
Harshlight.c:1474: warning: unknown conversion type character `)' in format
Harshlight.c: In function `chip_summary':
Harshlight.c:1532: warning: unknown conversion type character `)' in format
Harshlight.c:1542: warning: unknown conversion type character `)' in format
Harshlight.c:1543: warning: unknown conversion type character `)' in format
Harshlight.c: In function `extended_stop':
Harshlight.c:1555: warning: unknown conversion type character `)' in format
gcc -std=gnu99 -shared -L/usr/local/lib -o Harshlight.so Harshlight.o   -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: altcdfenvs
Loading required package: matchprobes
Loading required package: makecdfenv
** help
 >>> Building/Updating help pages for package 'Harshlight'
     Formats: text html latex example 
  HarshComp                         text    html    latex
  HarshExt                          text    html    latex
  Harshlight                        text    html    latex   example
  sim                               text    html    latex
** building package indices ...
* DONE (Harshlight)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
    file 'Harshlight/src/Harshlight.c' had non-LF line endings
* checking for empty or unneeded directories
* building 'Harshlight_1.8.0.tar.gz'