Package: GlobalAncova

Version: 3.4.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check GlobalAncova_3.4.0.tar.gz

RetCode: 0

Time: 285.2 seconds

Status: OK

CheckDir: GlobalAncova.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/GlobalAncova.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'GlobalAncova/DESCRIPTION' ... OK
* this is package 'GlobalAncova' version '3.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GlobalAncova' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GAGO: no visible global function definition for 'fillPattern'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GlobalAncova-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GlobalAncova-manual.tex ... OK
* checking GlobalAncova-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/GlobalAncova.Rcheck


---------- Making package GlobalAncova ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making GlobalAncova.d from GlobalAncova.c
making ludcmp.d from ludcmp.c
making matrix.d from matrix.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut':
GlobalAncova.c:198: warning: 'ord_perm' may be used uninitialized in this function
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:119: warning: 'ord_perm' may be used uninitialized in this function
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c ludcmp.c -o ludcmp.o
ludcmp.c:232:24: warning: no newline at end of file
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c matrix.c -o matrix.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i GlobalAncova_res.rc -o GlobalAncova_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o GlobalAncova.dll GlobalAncova.def GlobalAncova.o ludcmp.o matrix.o GlobalAncova_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GlobalAncova'
     Formats: text html latex example chm 
  GAGO                              text    html    latex   example chm
  GlobalAncova-methods              text    html    latex           chm
  GlobalAncova                      text    html    latex   example chm
  GlobalAncova.closed-methods       text    html    latex           chm
  GlobalAncova.closed               text    html    latex           chm
  GlobalAncova.decomp               text    html    latex   example chm
  Plot.all                          text    html    latex   example chm
  Plot.genes-methods                text    html    latex           chm
  Plot.genes                        text    html    latex   example chm
  Plot.sequential                   text    html    latex   example chm
  Plot.subjects-methods             text    html    latex           chm
  Plot.subjects                     text    html    latex   example chm
  colon.normal                      text    html    latex   example chm
  colon.pheno                       text    html    latex   example chm
  colon.tumour                      text    html    latex   example chm
  pair.compare                      text    html    latex   example chm
  pathways                          text    html    latex   example chm
  phenodata                         text    html    latex   example chm
  vantVeer                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\GlobalAncova.Rcheck\00_pkg_src\GlobalAncova\chm\GlobalAncova.chm


Compile time: 0 minutes, 0 seconds
20	Topics
87	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\GlobalAncova.Rcheck\00_pkg_src\GlobalAncova\chm\GlobalAncova.chm, 45,685 bytes
Compression decreased file by 51,062 bytes.
  preparing package GlobalAncova for lazy loading
Loading required package: corpcor
Loading required package: globaltest
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
  adding MD5 sums

* DONE (GlobalAncova)