Package: DEDS

Version: 1.12.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build DEDS

RetCode: 0

Time: 53.0 seconds

Status: OK

PackageFile: DEDS_1.12.0.tar.gz

* checking for file 'DEDS/DESCRIPTION' ... OK
* preparing 'DEDS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst149214416


---------- Making package DEDS ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making deds.d from deds.c
making distance.d from distance.c
making input.d from input.c
making manip.d from manip.c
making random.d from random.c
making sampling.d from sampling.c
making stat_fun.d from stat_fun.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c deds.c -o deds.o
deds.c: In function 'type2stat':
deds.c:451: warning: 'test' may be used uninitialized in this function
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c distance.c -o distance.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c input.c -o input.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c manip.c -o manip.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c random.c -o random.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c sampling.c -o sampling.o
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.1-bioc/R/include    -Wall -O3  -c stat_fun.c -o stat_fun.o
stat_fun.c: In function 'tmixture':
stat_fun.c:1085: warning: statement with no effect
stat_fun.c:1085: warning: 'res' is used uninitialized in this function
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i DEDS_res.rc -o DEDS_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o DEDS.dll DEDS.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o DEDS_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'comp.ebayes' on or after line 38
Note: unmatched right brace in 'comp.ebayes.Rd' on or after line 38
 >>> Building/Updating help pages for package 'DEDS'
     Formats: text html latex example chm 
  ApoA1                             text    html    latex           chm
  DEDS-internal                     text    html    latex           chm
  affySpikeIn                       text    html    latex           chm
  aggregateFun                      text    html    latex   example chm
  comp.B                            text    html    latex   example chm
  comp.F                            text    html    latex   example chm
  comp.FC                           text    html    latex   example chm
  comp.SAM                          text    html    latex   example chm
  comp.adjp                         text    html    latex   example chm
  comp.ebayes                       text    html    latex   example chm
  comp.fdr                          text    html    latex   example chm
  comp.modF                         text    html    latex   example chm
  comp.modt                         text    html    latex   example chm
  comp.stat                         text    html    latex   example chm
  comp.t                            text    html    latex   example chm
  comp.unadjp                       text    html    latex   example chm
  deds.chooseTest                   text    html    latex   example chm
  deds.class                        text    html    latex           chm
  deds.genExtra                     text    html    latex   example chm
  deds.pval                         text    html    latex   example chm
  deds.stat                         text    html    latex   example chm
  deds.stat.linkC                   text    html    latex   example chm
  hist.DEDS                         text    html    latex   example chm
  pairs.DEDS                        text    html    latex   example chm
  qqnorm.DEDS                       text    html    latex   example chm
  topgenes                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\DEDS\chm\DEDS.chm





Compile time: 0 minutes, 1 second

27	Topics

195	Local links

1	Internet link

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\DEDS\chm\DEDS.chm, 57,205 bytes

Compression decreased file by 74,673 bytes.

  preparing package DEDS for lazy loading
  adding MD5 sums

* DONE (DEDS)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DEDS_1.12.0.tar.gz'