Package: pairseqsim

Version: 1.9.3

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build pairseqsim

RetCode: 1

Time: 15.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst513244055


---------- Making package pairseqsim ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making align.d from align.c
making basic.d from basic.c
making callalign.d from callalign.c
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c align.c -o align.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c basic.c -o basic.o
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c callalign.c -o callalign.o
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i pairseqsim_res.rc -o pairseqsim_res.o
gcc  -shared -s  -o pairseqsim.dll pairseqsim.def align.o basic.o callalign.o pairseqsim_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'EPAM110' on or after line 80
Note: unmatched right brace in 'EPAM110.Rd' on or after line 80
Note: unmatched right brace in 'Submatrix-class' on or after line 14
Note: unmatched right brace in 'Submatrix-class.Rd' on or after line 14
 >>> Building/Updating help pages for package 'pairseqsim'
     Formats: text html latex example chm 
  AAAlignment-class                 text    html    latex   example chm
  AAAlphabet-class                  text    html    latex   example chm
  AASequence-class                  text    html    latex   example chm
  AASequence                        text    html    latex   example chm
  AASequenceList-class              text    html    latex   example chm
  EPAM110                           text    html    latex   example chm
  Submatrix-class                   text    html    latex           chm
  listdist-methods                  text    html    latex           chm
  readFasta-methods                 text    html    latex   example chm
  salign-methods                    text    html    latex   example chm
  sequlist                          text    html    latex   example chm
  testalign-methods                 text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\pairseqsim\chm\pairseqsim.chm





Compile time: 0 minutes, 0 seconds

13	Topics

129	Local links

11	Internet links

1	Graphic





Created d:\biocbld\bbs-2.1-bioc\meat\pairseqsim\chm\pairseqsim.chm, 28,421 bytes

Compression decreased file by 38,335 bytes.

  adding MD5 sums

* DONE (pairseqsim)
* creating vignettes ... ERROR
Creating a new generic function for "levels" in "pairseqsim"
Creating a new generic function for "frequency" in "pairseqsim"
Creating a new generic function for "summary" in "pairseqsim"
 Refusing to claim no (or even less memmory ... !