Package: bgx

Version: 1.1.4

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build bgx

RetCode: 0

Time: 184.8 seconds

Status: OK

PackageFile: bgx_1.1.4.tar.gz

* checking for file 'bgx/DESCRIPTION' ... OK
* preparing 'bgx':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst47603329


---------- Making package bgx ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making qnorm.d from qnorm.c
making bgx.d from bgx.cc
making bgx_frontend.d from bgx_frontend.cc
making rundir.d from rundir.cc
making sokal.d from sokal.cc
gcc  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99 -DUSING_R -march=i386 -ffast-math -O3  -std=c99  -c qnorm.c -o qnorm.o
g++  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2 -DUSING_R -march=i386 -ffast-math -O3  -c bgx.cc -o bgx.o
g++  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2 -DUSING_R -march=i386 -ffast-math -O3  -c bgx_frontend.cc -o bgx_frontend.o
g++  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2 -DUSING_R -march=i386 -ffast-math -O3  -c rundir.cc -o rundir.o
g++  -I c:/boost_1_33_1 -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O2 -DUSING_R -march=i386 -ffast-math -O3  -c sokal.cc -o sokal.o
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i bgx_res.rc -o bgx_res.o
g++  -shared -s  -o bgx.dll bgx.def qnorm.o bgx.o bgx_frontend.o rundir.o sokal.o bgx_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'bgx'
     Formats: text html latex example chm 
  analysis.bgx                      text    html    latex   example chm
  bgx                               text    html    latex   example chm
  mcmc.bgx                          text    html    latex   example chm
  readOutput.bgx                    text    html    latex   example chm
  saveAffinityPlot.bgx              text    html    latex   example chm
  setupVars.bgx                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\bgx\chm\bgx.chm





Compile time: 0 minutes, 0 seconds

7	Topics

35	Local links

0	Internet links

1	Graphic





Created d:\biocbld\bbs-2.1-bioc\meat\bgx\chm\bgx.chm, 27,006 bytes

Compression decreased file by 4,875 bytes.

  preparing package bgx for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: splines
  adding MD5 sums

* DONE (bgx)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'bgx_1.1.4.tar.gz'