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| Package 214/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
xcms1.8.0Colin A. SmithLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | ERROR | ||
| churchill | Solaris 2.9 | sparc | ERROR | skipped | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | [ OK ] | |
| derby | Mac OS X (10.4.9) | i686 | OK | ERROR |
| Package: xcms |
| Version: 1.8.0 |
| Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD INSTALL --build --library=xcms.BUILDBINinstdir xcms_1.8.0.tar.gz |
| RetCode: 0 |
| Time: 33.0 seconds |
| Status: OK |
| PackageFile: xcms_1.8.0.zip |
installing R.css in E:/biocbld/bbs-2.0-bioc/meat/xcms.BUILDBINinstdir
Using auto-selected zip options ' xcms-HELP=ziponly'
---------- Making package xcms ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making base64.d from base64.c
making mzboxes.d from mzboxes.c
making netCDF.d from netCDF.c
making ramp.d from ramp.c
making rampR.d from rampR.c
making util.d from util.c
making xcms.d from xcms.c
gcc -I./win -D_MSC_VER -IE:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c base64.c -o base64.o
base64.c:18: warning: 'encode_group' defined but not used
base64.c:46: warning: 'decode_group' defined but not used
gcc -I./win -D_MSC_VER -IE:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c mzboxes.c -o mzboxes.o
gcc -I./win -D_MSC_VER -IE:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c netCDF.c -o netCDF.o
gcc -I./win -D_MSC_VER -IE:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c ramp.c -o ramp.o
ramp.c: In function `readPeaks':
ramp.c:1282: warning: dereferencing type-punned pointer will break strict-aliasing rules
ramp.c:1295: warning: dereferencing type-punned pointer will break strict-aliasing rules
ramp.c:1499: warning: dereferencing type-punned pointer will break strict-aliasing rules
ramp.c:1510: warning: dereferencing type-punned pointer will break strict-aliasing rules
ramp.c:1517: warning: 'lastMass' might be used uninitialized in this function
ramp.c:1518: warning: 'deltaMass' might be used uninitialized in this function
ramp.c:1519: warning: 'multiplier' might be used uninitialized in this function
gcc -I./win -D_MSC_VER -IE:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c rampR.c -o rampR.o
gcc -I./win -D_MSC_VER -IE:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c util.c -o util.o
gcc -I./win -D_MSC_VER -IE:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c xcms.c -o xcms.o
xcms.c: In function `ProfBinLin':
xcms.c:11: warning: 'xpre' might be used uninitialized in this function
xcms.c:11: warning: 'ypre' might be used uninitialized in this function
xcms.c: In function `ProfBinLinBase':
xcms.c:62: warning: 'ipre' might be used uninitialized in this function
windres -I E:/biocbld/bbs-2.0-bioc/R/include -i xcms_res.rc -o xcms_res.o
gcc -shared -s -o xcms.dll xcms.def base64.o mzboxes.o netCDF.o ramp.o rampR.o util.o xcms.o xcms_res.o -LE:/biocbld/bbs-2.0-bioc/R/bin -L./win -lws2_32 -lnetcdf -lz -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'xcms'
Formats: text html latex example chm
SSgauss text html latex chm
c.xcmsSet text html latex chm
colMax text html latex chm
descendZero text html latex example chm
diffreport-methods text html latex chm
doubleMatrix text html latex chm
etg text html latex chm
fillPeaks-methods text html latex chm
filtfft text html latex chm
findEqualGreater text html latex chm
findMZBoxes-methods text html latex chm
findPeaks-methods text html latex chm
findPeaks.centWave-methods text html latex chm
findPeaks.matchedFilter-methods text html latex chm
getEIC-methods text html latex chm
getPeaks-methods text html latex chm
getScan-methods text html latex chm
getSpec-methods text html latex chm
group-methods text html latex chm
groupnames-methods text html latex chm
groupval-methods text html latex chm
image.xcmsRaw text html latex chm
medianFilter text html latex example chm
na.flatfill text html latex chm
netCDF text html latex chm
panel.cor text html latex chm
plot.xcmsEIC text html latex chm
plotChrom-methods text html latex chm
plotPeaks-methods text html latex chm
plotRaw-methods text html latex chm
plotScan-methods text html latex chm
plotSpec-methods text html latex chm
plotSurf-methods text html latex chm
plotTIC-methods text html latex chm
plotrt-methods text html latex chm
profGenerate text html latex chm
profMedFilt-methods text html latex chm
profMethod-methods text html latex chm
profRange-methods text html latex chm
profStep-methods text html latex chm
pval text html latex chm
ramp text html latex chm
rawEIC-methods text html latex chm
rectUnique text html latex example chm
retcor-methods text html latex chm
retexp text html latex chm
sampnames-methods text html latex chm
specNoise text html latex chm
specPeaks text html latex chm
split.xcmsSet text html latex chm
xcmsEIC-class text html latex chm
xcmsRaw-class text html latex chm
xcmsRaw text html latex chm
xcmsSet-class text html latex chm
xcmsSet text html latex chm
zipping help files
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.3708\xcms\chm\xcms.chm
Compile time: 0 minutes, 1 second
56 Topics
278 Local links
8 Internet links
1 Graphic
Created e:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.3708\xcms\chm\xcms.chm, 77,573 bytes
Compression decreased file by 126,544 bytes.
preparing package xcms for lazy loading
adding MD5 sums
packaged installation of package 'xcms' as xcms_1.8.0.zip
* DONE (xcms)