Package: oligo

Version: 1.0.2

Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD INSTALL --build --library=oligo.BUILDBINinstdir oligo_1.0.2.tar.gz

RetCode: 0

Time: 24.0 seconds

Status: OK

PackageFile: oligo_1.0.2.zip

installing R.css in E:/biocbld/bbs-2.0-bioc/meat/oligo.BUILDBINinstdir

Using auto-selected zip options ' oligo-HELP=ziponly'

---------- Making package oligo ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making M_estimator2.d from M_estimator2.c
making baseProfile.d from baseProfile.c
making basecontent.d from basecontent.c
gcc  -IE:/biocbld/bbs-2.0-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c M_estimator2.c -o M_estimator2.o
M_estimator2.c: In function `R_HuberMatrixRows2':
M_estimator2.c:129: warning: 'scale1' might be used uninitialized in this function
M_estimator2.c:129: warning: 'scale2' might be used uninitialized in this function
M_estimator2.c:129: warning: 'scale3' might be used uninitialized in this function
gcc  -IE:/biocbld/bbs-2.0-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c baseProfile.c -o baseProfile.o
gcc  -IE:/biocbld/bbs-2.0-bioc/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c basecontent.c -o basecontent.o
windres -I E:/biocbld/bbs-2.0-bioc/R/include  -i oligo_res.rc -o oligo_res.o
gcc  -shared -s  -o oligo.dll oligo.def M_estimator2.o baseProfile.o basecontent.o oligo_res.o  -LE:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: BufferedMatrix
Loading required package: BufferedMatrixMethods
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'oligo'
     Formats: text html latex example chm 
  DBPDInfo-class                    text    html    latex   example chm
  FeatureSet-class                  text    html    latex   example chm
     missing link(s):  eSet-class VersionedBiobase-class Versioned-class eSet-class VersionedBiobase-class Versioned-class
  FeatureSetExtensions-class        text    html    latex   example chm
     missing link(s):  eSet-class VersionedBiobase-class Versioned-class eSet-class VersionedBiobase-class Versioned-class
  Index-methods                     text    html    latex   example chm
  IntensityMatrix-methods           text    html    latex   example chm
  PDInfo-class                      text    html    latex   example chm
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  Sequences-methods                 text    html    latex   example chm
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  SnpQSet-class                     text    html    latex   example chm
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     missing link(s):  eSet-class VersionedBiobase-class Versioned-class eSet-class VersionedBiobase-class Versioned-class
  basecontent                       text    html    latex   example chm
  boxplot                           text    html    latex   example chm
  chromosome                        text    html    latex   example chm
  crlmm                             text    html    latex   example chm
  featureIndex                      text    html    latex   example chm
  genomeBuild                       text    html    latex   example chm
  getPlatformDesign                 text    html    latex   example chm
  hist                              text    html    latex   example chm
  image                             text    html    latex   example chm
  internals                         text    html    latex   example chm
  kind                              text    html    latex   example chm
  list.celfiles                     text    html    latex   example chm
  manufacturer                      text    html    latex   example chm
  nProbes                           text    html    latex   example chm
  ncol                              text    html    latex   example chm
  oligo-package                     text    html    latex   example chm
  platform                          text    html    latex   example chm
  platformDesign-class              text    html    latex   example chm
  plotDensity                       text    html    latex   example chm
  pmAllele                          text    html    latex   example chm
  pmPosition                        text    html    latex   example chm
  pmStrand                          text    html    latex   example chm
  probeNames                        text    html    latex   example chm
  read.celfiles                     text    html    latex   example chm
  read.xysfiles                     text    html    latex   example chm
  rma                               text    html    latex   example chm
  sequenceDesignMatrix              text    html    latex   example chm
  snprma                            text    html    latex   example chm
  snprmaSummaries                   text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.4040\oligo\chm\oligo.chm





Compile time: 0 minutes, 0 seconds

43	Topics

215	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.4040\oligo\chm\oligo.chm, 41,506 bytes

Compression decreased file by 89,518 bytes.

  adding MD5 sums

packaged installation of package 'oligo' as oligo_1.0.2.zip
* DONE (oligo)