Package: multtest

Version: 1.14.0

Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check multtest_1.14.0.tar.gz

RetCode: 0

Time: 152.9 seconds

Status: OK

CheckDir: multtest.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/multtest.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'multtest/DESCRIPTION' ... OK
* this is package 'multtest' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'multtest' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating multtest-Ex.R ... OK
* checking examples ... OK
* creating multtest-manual.tex ... OK
* checking multtest-manual.tex ... OK

* Installing *source* package 'multtest' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c bootloop.c -o bootloop.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c mt.c -o mt.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c pairt_sampling.c -o pairt_sampling.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c random.c -o random.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c Rpack.c -o Rpack.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c sampling.c -o sampling.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c sampling_fixed.c -o sampling_fixed.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c stat_func.c -o stat_func.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c stat_order.c -o stat_order.o
gcc -std=gnu99 -shared -L/usr/local/lib -o multtest.so block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o Rpack.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm  -L/loc/biocbuild/bbs-2.0-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "as.list" in "multtest"
** help
 >>> Building/Updating help pages for package 'multtest'
     Formats: text html latex example 
  MTP-class                         text    html    latex   example
  MTP-methods                       text    html    latex
  MTP                               text    html    latex   example
  boot.resample                     text    html    latex   example
  fwer2gfwer                        text    html    latex   example
  get.index                         text    html    latex   example
  golub                             text    html    latex
  meanX                             text    html    latex   example
  mt.internal                       text    html    latex
  mt.maxT                           text    html    latex   example
  mt.plot                           text    html    latex   example
  mt.rawp2adjp                      text    html    latex   example
  mt.reject                         text    html    latex   example
  mt.sample.teststat                text    html    latex   example
  mt.teststat                       text    html    latex   example
  ss.maxT                           text    html    latex   example
  wapply                            text    html    latex   example
** building package indices ...
* DONE (multtest)