Package: makePlatformDesign

Version: 1.0.0

Command: /home/biocbuild/bbs-2.0-bioc/R/bin/R CMD check makePlatformDesign_1.0.0.tar.gz

RetCode: 0

Time: 28.5 seconds

Status: OK

CheckDir: makePlatformDesign.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.0-bioc/meat/makePlatformDesign.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'makePlatformDesign/DESCRIPTION' ... OK
* this is package 'makePlatformDesign' version '1.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'makePlatformDesign' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating makePlatformDesign-Ex.R ... OK
* checking examples ... OK
* creating makePlatformDesign-manual.tex ... OK
* checking makePlatformDesign-manual.tex ... OK

* Installing *source* package 'makePlatformDesign' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c main.c -o main.o
main.c: In function 'strstr_with_pmormm':
main.c:70: warning: suggest parentheses around assignment used as truth value
main.c:87: warning: suggest parentheses around assignment used as truth value
main.c: In function 'MP_matchprobes':
main.c:111: warning: 'rvpos' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c strutils.c -o strutils.o
strutils.c:242:1: warning: "/*" within comment
strutils.c: In function 'MP_longestConsecutive':
strutils.c:259: warning: format '%d' expects type 'int', but argument 3 has type 'size_t'
gcc -std=gnu99 -shared -L/usr/local/lib64 -o makePlatformDesign.so main.o strutils.o   -L/home/biocbuild/bbs-2.0-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Loading required package: affyio
Loading required package: oligo
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: BufferedMatrix
Loading required package: BufferedMatrixMethods
This is the oligo package
** help
 >>> Building/Updating help pages for package 'makePlatformDesign'
     Formats: text html latex example 
  makePDpackage                     text    html    latex   example
  makePlatformDesign-internal       text    html    latex
** building package indices ...
* DONE (makePlatformDesign)