Package: beadarraySNP

Version: 1.2.0

Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check beadarraySNP_1.2.0.tar.gz

RetCode: 0

Time: 95.4 seconds

Status: OK

CheckDir: beadarraySNP.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.0-bioc/meat/beadarraySNP.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'beadarraySNP' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'beadarraySNP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating beadarraySNP-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating beadarraySNP-manual.tex ... OK
* checking beadarraySNP-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.0-bioc/meat/beadarraySNP.Rcheck


---------- Making package beadarraySNP ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'beadarraySNP'
     Formats: text html latex example chm 
  CopynumberConversion              text    html    latex   example chm
  Datasets                          text    html    latex           chm
  GenomicReports                    text    html    latex   example chm
  PolarTransforms                   text    html    latex   example chm
  QCIllumina-class                  text    html    latex           chm
  arrayType                         text    html    latex           chm
  backgroundCorrect.SNP             text    html    latex   example chm
  backgroundEstimate                text    html    latex   example chm
  calculateLOH                      text    html    latex   example chm
  calculateQCarray                  text    html    latex   example chm
  class.SnpSetIllumina              text    html    latex           chm
  compareGenotypes                  text    html    latex   example chm
  heterozygosity                    text    html    latex   example chm
  heterozygousSNPs                  text    html    latex   example chm
  normalizeBetweenAlleles.SNP       text    html    latex   example chm
  normalizeLoci.SNP                 text    html    latex   example chm
  normalizeWithinArrays.SNP         text    html    latex   example chm
  pdfChromosomesSmoothCopyNumber    text    html    latex   example chm
  pdfQC                             text    html    latex           chm
  plotQC                            text    html    latex   example chm
  read.SnpSetIllumina               text    html    latex   example chm
  removeLowQualityProbes            text    html    latex           chm
  removeLowQualitySamples           text    html    latex   example chm
  renameOPA                         text    html    latex   example chm
  reportSamplePanelQC-methods       text    html    latex   example chm
  smoothed.intensity                text    html    latex   example chm
  standardNormalization             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.0-bioc\meat\beadarraySNP.Rcheck\00_pkg_src\beadarraySNP\chm\beadarraySNP.chm


Compile time: 0 minutes, 0 seconds
28	Topics
131	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.0-bioc\meat\beadarraySNP.Rcheck\00_pkg_src\beadarraySNP\chm\beadarraySNP.chm, 48,263 bytes
Compression decreased file by 56,026 bytes.
  preparing package beadarraySNP for lazy loading
Loading required package: tools
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM
Loading required package: lodplot
Loading required package: grid
  adding MD5 sums

* DONE (beadarraySNP)