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Package 17/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
annotate1.14.1Biocore TeamLast Changed Date: 2007-04-24 14:06:34 -0700 Last Changed Rev: 24225 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | ERROR | skipped | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK | |
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
derby | Mac OS X (10.4.9) | i686 | OK | WARNINGS |
Package: annotate |
Version: 1.14.1 |
Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check annotate_1.14.1.tar.gz |
RetCode: 0 |
Time: 267.4 seconds |
Status: OK |
CheckDir: annotate.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.0-bioc/meat/annotate.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'annotate/DESCRIPTION' ... OK * this is package 'annotate' version '1.14.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'annotate' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating annotate-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating annotate-manual.tex ... OK * checking annotate-manual.tex ... OK
annotate.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.0-bioc/meat/annotate.Rcheck ---------- Making package annotate ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files save image Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'annotate' Formats: text html latex example chm ACCNUMStats text html latex example chm GO2heatmap text html latex example chm GOTerms-class text html latex example chm GOmnplot text html latex example chm HTMLPage-class text html latex example chm LL2homology text html latex example chm PMIDAmat text html latex example chm PWAmat text html latex example chm UniGeneQuery text html latex example chm accessionToUID text html latex example chm annPkgName text html latex example chm aqListGOIDs text html latex example chm buildChromLocation text html latex example chm buildPubMedAbst text html latex example chm chrCats text html latex example chm chromLocation-class text html latex example chm compatibleVersions text html latex example chm dropECode text html latex example chm filterGOByOntology text html latex example chm findNeighbors text html latex example chm genbank text html latex example chm genelocator text html latex example chm getAnnMap text html latex example chm getEvidence text html latex example chm getGOTerm text html latex example chm getOntology text html latex example chm getPMInfo text html latex example chm getSYMBOL text html latex example chm getSeq4Acc text html latex example chm getTDRows text html latex chm hasGOannote text html latex example chm hgByChroms text html latex example chm hgCLengths text html latex example chm hgu95AProbLocs text html latex chm hgu95Achroloc text html latex example chm hgu95Achrom text html latex example chm hgu95All text html latex example chm hgu95Asym text html latex example chm homoData-class text html latex example chm htmlpage text html latex example chm installDataPackage text html latex example chm locuslinkById text html latex example chm locuslinkQuery text html latex example chm makeAnchor text html latex example chm neighborGeneFinder text html latex example chm p2LL text html latex example chm pm.abstGrep text html latex example chm pm.getabst text html latex example chm pm.titles text html latex example chm pmAbst2HTML text html latex example chm pmid2MIAME text html latex example chm pmidQuery text html latex example chm probesByLL text html latex example chm pubMedAbst-class text html latex example chm pubmed text html latex example chm readGEOAnn text html latex example chm serializeEnv text html latex example chm usedChromGenes text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.0-bioc\meat\annotate.Rcheck\00_pkg_src\annotate\chm\annotate.chm Compile time: 0 minutes, 1 second 59 Topics 310 Local links 7 Internet links 1 Graphic Created e:\biocbld\bbs-2.0-bioc\meat\annotate.Rcheck\00_pkg_src\annotate\chm\annotate.chm, 93,131 bytes Compression decreased file by 139,847 bytes. adding MD5 sums * DONE (annotate)