Package: GeneticsPed

Version: 1.0.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build GeneticsPed

RetCode: 0

Time: 48.5 seconds

Status: OK

PackageFile: GeneticsPed_1.0.0.tar.gz

* checking for file 'GeneticsPed/DESCRIPTION' ... OK
* preparing 'GeneticsPed':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.0-bioc/tmpdir/Rinst502898110


---------- Making package GeneticsPed ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making sargolzaei.d from sargolzaei.c
making ainverse.d from ainverse.cc
making eibd.d from eibd.cc
making inbreed.d from inbreed.cc
making inverseAdditive.d from inverseAdditive.cc
making meuwissen.d from meuwissen.cc
making pedSort.d from pedSort.cc
making pedtemplate.d from pedtemplate.cc
making register.d from register.cc
making sortped.d from sortped.cc
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c sargolzaei.c -o sargolzaei.o
sargolzaei.c: In function `sargolzaei':
sargolzaei.c:62: warning: statement with no effect
sargolzaei.c:19: warning: 'S' might be used uninitialized in this function
sargolzaei.c:19: warning: 'MIP' might be used uninitialized in this function
sargolzaei.c:19: warning: 'N' might be used uninitialized in this function
g77 -O3 -Wall   -c ggmatmult.f -o ggmatmult.o
g77 -O3 -Wall   -c gpi.f -o gpi.o
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c ainverse.cc -o ainverse.o
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c eibd.cc -o eibd.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h: In member function `typename std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_Link_type std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_copy(const std::_Rb_tree_node<_Val>*, std::_Rb_tree_node<_Val>*) [with _Key = unsigned int, _Val = std::pair<const unsigned int, EIBDMember>, _KeyOfValue = std::_Select1st<std::pair<const unsigned int, EIBDMember> >, _Compare = std::less<unsigned int>, _Alloc = std::allocator<std::pair<const unsigned int, EIBDMember> >]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h:1029: warning: '__top' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_tree.h:365: warning: '__tmp' might be used uninitialized in this function
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c inbreed.cc -o inbreed.o
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c inverseAdditive.cc -o inverseAdditive.o
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c meuwissen.cc -o meuwissen.o
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c pedSort.cc -o pedSort.o
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c pedtemplate.cc -o pedtemplate.o
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c register.cc -o register.o
g++   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c sortped.cc -o sortped.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator<std::string>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i GeneticsPed_res.rc -o GeneticsPed_res.o
g++  -shared -s  -o GeneticsPed.dll GeneticsPed.def sargolzaei.o ggmatmult.o gpi.o ainverse.o eibd.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sortped.o GeneticsPed_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin   -lg2c -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GeneticsPed'
     Formats: text html latex example chm 
  Mrode                             text    html    latex   example chm
  TDT                               text    html    latex   example chm
  check                             text    html    latex   example chm
  codeUnit                          text    html    latex   example chm
  extend                            text    html    latex   example chm
  family                            text    html    latex   example chm
  founder                           text    html    latex   example chm
  geneContribution                  text    html    latex   example chm
  generatePedigree                  text    html    latex   example chm
  generation                        text    html    latex   example chm
  gpi                               text    html    latex   example chm
  inbreeding                        text    html    latex   example chm
  model.matrix                      text    html    latex   example chm
  nIndividual                       text    html    latex   example chm
  pedigree                          text    html    latex   example chm
  relationshipAdditive              text    html    latex   example chm
  removeIndividual                  text    html    latex   example chm
  sort.pedigree                     text    html    latex   example chm
  summary.pedigree                  text    html    latex   example chm
  undocumented                      text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.0-bioc\meat\GeneticsPed\chm\GeneticsPed.chm





Compile time: 0 minutes, 0 seconds

21	Topics

91	Local links

12	Internet links

1	Graphic





Created d:\biocbld\bbs-2.0-bioc\meat\GeneticsPed\chm\GeneticsPed.chm, 51,304 bytes

Compression decreased file by 40,440 bytes.

  preparing package GeneticsPed for lazy loading
Loading required package: gdata
Loading required package: MASS
  adding MD5 sums

* DONE (GeneticsPed)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'GeneticsPed_1.0.0.tar.gz'