Package: Rgraphviz

Version: 1.12.1

Command: /loc/biocbuild/1.9d/R/bin/R CMD build Rgraphviz

RetCode: 0

Time: 97.6 seconds

Status: OK

PackageFile: Rgraphviz_1.12.1.tar.gz

* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* preparing 'Rgraphviz':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'Rgraphviz' ...
checking for pkg-config... /usr/bin/pkg-config
Package libgvc was not found in the pkg-config search path.
Perhaps you should add the directory containing `libgvc.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libgvc' found
configure: pkg-config was not able to find graphviz.  Verify graphviz is installed and that PKG_CONFIG_PATH is correct.
checking for dotneato-config... /usr/local/bin/dotneato-config
configure: Found graphviz 2.2.1
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include/graphviz -DGRAPHVIZGT_1_16 -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c Rgraphviz.c -o Rgraphviz.o
In file included from /usr/local/include/graphviz/render.h:53,
                 from common.h:32,
                 from Rgraphviz.c:1:
/usr/local/include/graphviz/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:15,
                 from Rgraphviz.c:1:
/loc/biocbuild/1.9d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
Rgraphviz.c: In function `getListElement':
Rgraphviz.c:54: warning: implicit declaration of function `Rf_type2char'
Rgraphviz.c: In function `Rgraphviz_doLayout':
Rgraphviz.c:437: warning: implicit declaration of function `circo_layout'
Rgraphviz.c:441: warning: implicit declaration of function `fdp_layout'
Rgraphviz.c: At top level:
common.h:46: warning: `gvc' defined but not used
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include/graphviz -DGRAPHVIZGT_1_16 -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c RgraphvizInit.c -o RgraphvizInit.o
In file included from /usr/local/include/graphviz/render.h:53,
                 from common.h:32,
                 from RgraphvizInit.c:1:
/usr/local/include/graphviz/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:15,
                 from RgraphvizInit.c:1:
/loc/biocbuild/1.9d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
common.h:46: warning: `gvc' defined but not used
gcc -shared -L/usr/local/lib -o Rgraphviz.so Rgraphviz.o RgraphvizInit.o -L/usr/local/lib/graphviz -ldotneato -lm  
** R
** inst
** save image
Loading required package: graph
Loading required package: geneplotter
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "lines" in "Rgraphviz"
Creating a new generic function for "plot" in "Rgraphviz"
** help
 >>> Building/Updating help pages for package 'Rgraphviz'
     Formats: text html latex example 
  AgEdge-class                      text    html    latex   example
  AgNode-class                      text    html    latex   example
  AgTextLabel-class                 text    html    latex   example
  BezierCurve-class                 text    html    latex   example
  GraphvizAttributes                text    html    latex   example
  GraphvizLayouts                   text    html    latex   example
  Ragraph-class                     text    html    latex   example
  agopen                            text    html    latex   example
  agwrite                           text    html    latex   example
  boundingBox-class                 text    html    latex   example
  buildNodeList                     text    html    latex   example
  getDefaultAttrs                   text    html    latex   example
  graphvizVersion                   text    html    latex   example
  imageMap                          text    html    latex   example
  layoutGraph                       text    html    latex   example
  makeNodeAttrs                     text    html    latex   example
  pEdge-class                       text    html    latex   example
  pNode-class                       text    html    latex   example
  pieGlyph                          text    html    latex   example
  plot-methods                      text    html    latex   example
  removedEdges                      text    html    latex   example
  toDot-methods                     text    html    latex   example
  xyPoint-class                     text    html    latex   example
** building package indices ...
* DONE (Rgraphviz)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'Rgraphviz_1.12.1.tar.gz'