* checking for file 'HEM/DESCRIPTION' ... OK
* preparing 'HEM':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'HEM' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c hem.c -o hem.o
gcc -shared -L/usr/local/lib -o HEM.so hem.o
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
** help
>>> Building/Updating help pages for package 'HEM'
Formats: text html latex example
am.tran text html latex
am.tran.half text html latex
base.ASE.Olig text html latex
base.PSE.Olig text html latex
base.error.Olig text html latex
base.error.Olig.quanOnly text html latex
boot.base.ASE.Olig text html latex
boot.base.PSE.Olig text html latex
boot.base.error.Olig text html latex
fixbound.predict.smooth.spline text html latex
hem text html latex example
hem.eb.prior text html latex example
hem.fdr text html latex example
hem.null.no text html latex
hem.null.one text html latex
hem.null.two text html latex
hem.preproc text html latex example
mubcp text html latex
nonpar.error.Olig text html latex
nonpar.no.error.Olig text html latex
nonpar.rep.error.Olig text html latex
par.error.Olig text html latex
par.no.error.Olig text html latex
par.rep.error.Olig text html latex
pbrain text html latex
permut text html latex
quant.norm text html latex
quant.normal text html latex
quant.normal2 text html latex
quant.normalize text html latex
remove.sig.genes text html latex
** building package indices ...
* DONE (HEM)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'HEM_1.6.0.tar.gz'