Package: EBImage

Version: 1.6.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check EBImage_1.6.0.tar.gz

RetCode: 0

Time: 138.5 seconds

Status: OK

CheckDir: EBImage.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.9d/Rpacks/EBImage.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'EBImage/DESCRIPTION' ... OK
* this is package 'EBImage' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBImage' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBImage-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBImage-manual.tex ... OK
* checking EBImage-manual.tex ... OK

* Installing *source* package 'EBImage' ...
checking for Magick++-config... yes
ImageMagick version 6.0.7 found
checking for Magick++-config... yes
ImageMagick++ includes located in -I/usr/include
R found in: /loc/biocbuild/1.9d/R
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c alg_watershed.cpp -o alg_watershed.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c colors.cpp -o colors.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c common.cpp -o common.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c conversions.cpp -o conversions.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c display.cpp -o display.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c drawables.cpp -o drawables.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_distmap.cpp -o flt_distmap.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_magick.cpp -o flt_magick.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_morph.cpp -o flt_morph.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_normalize.cpp -o flt_normalize.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_thresh.cpp -o flt_thresh.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c indexing.cpp -o indexing.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c io.cpp -o io.o
g++ -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include   -I/usr/include -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c libmain.cpp -o libmain.o
g++ -shared -L/usr/local/lib -o EBImage.so alg_watershed.o colors.o common.o conversions.o display.o drawables.o flt_distmap.o flt_magick.o flt_morph.o flt_normalize.o flt_thresh.o indexing.o io.o libmain.o -L/usr/lib -L/usr/lib -L/usr/X11R6/lib -lfreetype -L/usr/lib -lMagick++ -lWand -lMagick -llcms -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread   
** R
** inst
** save image
** help
 >>> Building/Updating help pages for package 'EBImage'
     Formats: text html latex example 
  Drawable.class                    text    html    latex   example
  Drawable.draw                     text    html    latex   example
  EBImage-package                   text    html    latex
  Image.class                       text    html    latex   example
  Image.io                          text    html    latex   example
  alg.watershed                     text    html    latex   example
  colors                            text    html    latex   example
  colors.arithm                     text    html    latex
  flt.distMap                       text    html    latex   example
  flt.magick-colors                 text    html    latex   example
  flt.magick-enhance                text    html    latex   example
  flt.magick-segment                text    html    latex   example
  flt.magick-transform              text    html    latex   example
  flt.magick                        text    html    latex
  flt.morph                         text    html    latex   example
  flt.morph.mKernel                 text    html    latex   example
  flt.thresh                        text    html    latex   example
  internals                         text    html    latex
  updates                           text    html    latex
** building package indices ...
* DONE (EBImage)