Package: AnnBuilder

Version: 1.12.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check AnnBuilder_1.12.0.tar.gz

RetCode: 0

Time: 111.9 seconds

Status: OK

CheckDir: AnnBuilder.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.9d/Rpacks/AnnBuilder.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'AnnBuilder/DESCRIPTION' ... OK
* this is package 'AnnBuilder' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnBuilder' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating AnnBuilder-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating AnnBuilder-manual.tex ... OK
* checking AnnBuilder-manual.tex ... OK

* Installing *source* package 'AnnBuilder' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: XML
Loading required package: annotate
Loading required package: RSQLite
Loading required package: DBI
** help
 >>> Building/Updating help pages for package 'AnnBuilder'
     Formats: text html latex example 
  ABPkgBuilder                      text    html    latex   example
  EG-class                          text    html    latex
  GEO-class                         text    html    latex   example
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  GOPkgBuilder                      text    html    latex   example
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  KEGG-class                        text    html    latex   example
  KEGGPkgBuilder                    text    html    latex
  LL-class                          text    html    latex   example
  MeSHParser                        text    html    latex
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  SPPkgBuilder                      text    html    latex
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  YEAST-class                       text    html    latex   example
  YG-class                          text    html    latex   example
  addNamespace                      text    html    latex   example
  athPkgBuilder                     text    html    latex   example
  cMapPathBuilder                   text    html    latex   example
  chrLocPkgBuilder                  text    html    latex   example
  cleanSrcObjs                      text    html    latex
  cols2Env                          text    html    latex   example
  descriptionInfo                   text    html    latex   example
  downloadSourceData                text    html    latex
  fileMuncher                       text    html    latex   example
  fileToXML                         text    html    latex   example
  getChroLocation                   text    html    latex   example
  getDPStats                        text    html    latex   example
  getKEGGIDNName                    text    html    latex   example
  getPubDataGo                      text    html    latex
  getSrcBuilt                       text    html    latex   example
  getSrcUrl                         text    html    latex
  getUGShortName                    text    html    latex   example
  getYeastData                      text    html    latex   example
  homoPkgBuilder                    text    html    latex
  loadFromUrl                       text    html    latex   example
  makeLLDB                          text    html    latex
  makeSrcInfo                       text    html    latex   example
  map2LL                            text    html    latex   example
  pfamBuilder                       text    html    latex   example
  print.ABQCList                    text    html    latex   example
  pubDataURLs                       text    html    latex   example
  pubRepo-class                     text    html    latex   example
  queryGEO                          text    html    latex   example
  readSourceUrlConfig               text    html    latex
  resolveMaps                       text    html    latex   example
  sourceURLs                        text    html    latex   example
  unifyMappings                     text    html    latex   example
  wget                              text    html    latex
  writeChrLength                    text    html    latex   example
  writeHomoXMLData                  text    html    latex
  writeManPage                      text    html    latex   example
  writeSourceUrlConfig              text    html    latex
  writeXMLHeader                    text    html    latex   example
  yeastAnn                          text    html    latex   example
  yeastPkgBuilder                   text    html    latex   example
** building package indices ...
* DONE (AnnBuilder)