Using auto-selected zip options ' snapCGH-HELP=ziponly'
---------- Making package snapCGH ------------
adding build stamp to DESCRIPTION
making DLL ...
making optimizer.d from optimizer.c
gcc -ID:/biocbld/1.9d/R/include -Wall -O2 -std=gnu99 -c optimizer.c -o optimizer.o
windres --include-dir D:/biocbld/1.9d/R/include -i snapCGH_res.rc -o snapCGH_res.o
gcc -shared -s -o snapCGH.dll snapCGH.def optimizer.o snapCGH_res.o -LD:/biocbld/1.9d/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'snapCGH'
Formats: text html latex example chm
IDProbes text html latex chm
LargeDataObject text html latex example chm
SegList text html latex chm
Viterbi.five text html latex chm
Viterbi.four text html latex chm
Viterbi.three text html latex chm
Viterbi.two text html latex chm
cbind text html latex chm
chrominfo.Mb text html latex chm
compareSegmentations text html latex chm
convert.output text html latex example chm
dim text html latex example chm
dimnames text html latex chm
filter text html latex chm
find.param.five text html latex chm
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find.param.one text html latex chm
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findBreakPoints text html latex chm
fit.model text html latex chm
genomePlot text html latex example chm
heatmapGenome text html latex example chm
imputeMissingValues text html latex chm
log2ratios text html latex chm
mergeStates text html latex chm
non.zero.length.distr.non.tiled text html latex chm
non.zero.length.distr.tiled text html latex chm
nudSegmentation text html latex chm
plotSegmentedGenome text html latex example chm
processCGH text html latex chm
read.clonesinfo text html latex chm
readPositionalInfo text html latex chm
removeByWeights text html latex chm
runBioHMM text html latex chm
runDNAcopy text html latex chm
runGLAD text html latex chm
runHMM text html latex chm
runPicard text html latex chm
sim.structure text html latex example chm
subsetting text html latex example chm
zero.length.distr.non.tiled text html latex chm
zero.length.distr.tiled text html latex chm
zoomChromosome text html latex chm
zoomGenome text html latex chm
zipping help files
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\R.INSTALL\snapCGH\chm\snapCGH.chm
Compile time: 0 minutes, 0 seconds
46 Topics
139 Local links
0 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\R.INSTALL\snapCGH\chm\snapCGH.chm, 66,690 bytes
Compression decreased file by 84,758 bytes.
preparing package snapCGH for lazy loading
Loading required package: limma
Loading required package: tilingArray
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: affy
Loading required package: affyio
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following object(s) are masked from package:base :
rapply
Loading required package: sandwich
Loading required package: vsn
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: pixmap
Loading required package: DNAcopy
Attaching package: 'DNAcopy'
The following object(s) are masked from package:tilingArray :
segment
Loading required package: aCGH
Loading required package: cluster
Loading required package: multtest
Loading required package: sma
Attaching package: 'aCGH'
The following object(s) are masked from package:stats :
heatmap
Loading required package: GLAD
Attaching package: 'GLAD'
The following object(s) are masked from package:survival :
cluster
adding MD5 sums
packaged installation of package 'snapCGH' as snapCGH_1.2.0.zip
* DONE (snapCGH)