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Package 25/188 | OS | Arch | BUILD | CHECK | BUILD BIN |
beadarraySNP1.0.0Jan Oosting | Linux (SUSE 9.2) | x86_64 | OK | OK | |
Linux (SUSE 9.2) | i686 | OK | OK | ||
Solaris 2.9 | sparc | OK | OK | ||
Windows Server 2003 | x86_64 | OK | [ OK ] | OK |
Package: beadarraySNP |
Version: 1.0.0 |
Command: D:\biocbld\1.9d\R\bin\R.exe CMD check beadarraySNP_1.0.0.tar.gz |
RetCode: 0 |
Time: 125.2 seconds |
Status: OK |
CheckDir: beadarraySNP.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/beadarraySNP.Rcheck' * using R version 2.4.0 (2006-10-03) * checking for file 'beadarraySNP/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'beadarraySNP' version '1.0.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'beadarraySNP' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating beadarraySNP-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating beadarraySNP-manual.tex ... OK * checking beadarraySNP-manual.tex ... OK
beadarraySNP.Rcheck/00install.out:
installing R.css in D:/biocbld/1.9d/Rpacks/beadarraySNP.Rcheck ---------- Making package beadarraySNP ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'beadarraySNP' Formats: text html latex example chm Datasets text html latex chm GenomicReports text html latex example chm PolarTransforms text html latex example chm QCIllumina-class text html latex chm arrayType text html latex chm backgroundCorrect.SNP text html latex example chm backgroundEstimate text html latex example chm calculateQCarray text html latex example chm class.SnpSetIllumina text html latex chm compareGenotypes text html latex example chm heterozygosity text html latex example chm heterozygousSNPs text html latex example chm normalizeBetweenAlleles.SNP text html latex example chm normalizeLoci.SNP text html latex example chm normalizeWithinArrays.SNP text html latex example chm pdfChromosomesSmoothCopyNumber text html latex example chm pdfQC text html latex chm plotQC text html latex example chm read.SnpSetIllumina text html latex example chm removeLowQualityProbes text html latex chm removeLowQualitySamples text html latex example chm reportSamplePanelQC-methods text html latex example chm standardNormalization text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\1.9d\Rpacks\beadarraySNP.Rcheck\00_pkg_src\beadarraySNP\chm\beadarraySNP.chm Compile time: 0 minutes, 0 seconds 24 Topics 112 Local links 0 Internet links 1 Graphic Created d:\biocbld\1.9d\Rpacks\beadarraySNP.Rcheck\00_pkg_src\beadarraySNP\chm\beadarraySNP.chm, 44,081 bytes Compression decreased file by 44,833 bytes. preparing package beadarraySNP for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()' or start with 'help(Biobase)'. For details on reading vignettes, see the openVignette help page. Loading required package: limma Loading required package: quantsmooth Loading required package: quantreg Loading required package: SparseM Loading required package: lodplot Loading required package: grid adding MD5 sums * DONE (beadarraySNP)