Back to the "Multiple platform build/check report"
| Package 28/188 | OS | Arch | BUILD | CHECK | BUILD BIN |
Biobase1.12.2Biocore Team | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | [ OK ] | OK |
| Package: Biobase |
| Version: 1.12.2 |
| Command: D:\biocbld\1.9d\R\bin\R.exe CMD check Biobase_1.12.2.tar.gz |
| RetCode: 0 |
| Time: 89.4 seconds |
| Status: OK |
| CheckDir: Biobase.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/Biobase.Rcheck' * using R version 2.4.0 (2006-10-03) * checking for file 'Biobase/DESCRIPTION' ... OK * this is package 'Biobase' version '1.12.2' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Biobase' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating Biobase-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating Biobase-manual.tex ... OK * checking Biobase-manual.tex ... OK
Biobase.Rcheck/00install.out:
installing R.css in D:/biocbld/1.9d/Rpacks/Biobase.Rcheck
---------- Making package Biobase ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making Rinit.d from Rinit.c
making envir.d from envir.c
making matchpt.d from matchpt.c
gcc -Id:/biocbld/1.9d/R/include -Wall -O2 -std=gnu99 -c Rinit.c -o Rinit.o
gcc -Id:/biocbld/1.9d/R/include -Wall -O2 -std=gnu99 -c envir.c -o envir.o
gcc -Id:/biocbld/1.9d/R/include -Wall -O2 -std=gnu99 -c matchpt.c -o matchpt.o
windres --include-dir d:/biocbld/1.9d/R/include -i Biobase_res.rc -o Biobase_res.o
gcc -shared -s -o Biobase.dll Biobase.def Rinit.o envir.o matchpt.o Biobase_res.o -Ld:/biocbld/1.9d/R/bin -lR
... DLL made
installing DLL
installing R files
save image
Loading required package: tools
Creating a new generic function for "nrow" in "Biobase"
Creating a new generic function for "ncol" in "Biobase"
installing inst files
installing data files
installing man source files
installing indices
Loading required package: methods
not zipping data
installing help
>>> Building/Updating help pages for package 'Biobase'
Formats: text html latex example chm
Aggregate text html latex example chm
Biobase-package text html latex chm
abstract text html latex chm
addVig2Menu text html latex example chm
annotatedDataFrameFrom-methods text html latex chm
annotation text html latex chm
assayData text html latex chm
biocReposList text html latex example chm
cache text html latex example chm
class.AnnotatedDataFrame text html latex chm
class.AssayData text html latex chm
class.ExpressionSet text html latex example chm
class.MIAME text html latex chm
class.MultiSet text html latex example chm
class.SnpSet text html latex chm
class.Versioned text html latex example chm
class.VersionedBiobase text html latex example chm
class.Versions text html latex example chm
class.VersionsNull text html latex example chm
class.aggregator text html latex chm
class.annotatedDataset text html latex chm
class.characterORmiame text html latex chm
class.container text html latex example chm
class.eSet text html latex example chm
class.exprList text html latex example chm
class.exprMatrix text html latex chm
class.exprSet text html latex example chm
class.phenoData text html latex example chm
classVersion text html latex example chm
combine text html latex example chm
contents text html latex example chm
copyEnv text html latex example chm
copySubstitute text html latex example chm
createPackage text html latex example chm
data.aaMap text html latex example chm
data.eset text html latex example chm
data.geneData text html latex example chm
data.reporter text html latex example chm
data.sample.ExpressionSet text html latex example chm
data.sample.eSet text html latex example chm
data.sample.exprSet.1 text html latex example chm
data.sample.exprSet text html latex example chm
defunct text html latex chm
description text html latex chm
dims text html latex chm
dumpPackTxt text html latex example chm
esApply text html latex example chm
exprs text html latex chm
featureNames text html latex chm
getPkgVigs text html latex example chm
internals text html latex chm
isCurrent text html latex example chm
isUnique text html latex example chm
isVersioned text html latex example chm
matchpt text html latex example chm
multiassign text html latex example chm
note text html latex example chm
notes text html latex chm
openPDF text html latex example chm
openVignette text html latex example chm
package.version text html latex example chm
phenoData text html latex chm
read.MIAME text html latex example chm
read.exprSet text html latex example chm
read.phenoData text html latex example chm
reporterInfo text html latex chm
reverseSplit text html latex example chm
rowQ text html latex example chm
selectSome text html latex example chm
storageMode text html latex chm
strbreak text html latex example chm
testBioCConnection text html latex example chm
updateObject text html latex example chm
updateOldESet text html latex example chm
userQuery text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\Biobase.Rcheck\00_pkg_src\Biobase\chm\Biobase.chm
Compile time: 0 minutes, 0 seconds
76 Topics
741 Local links
5 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\Biobase.Rcheck\00_pkg_src\Biobase\chm\Biobase.chm, 117,854 bytes
Compression decreased file by 255,449 bytes.
adding MD5 sums
* DONE (Biobase)