* checking for file 'splicegear/DESCRIPTION' ... OK
* preparing 'splicegear':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'splicegear' ...
** R
** data
** inst
** save image
Loading required package: grid
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: XML
Loading required package: annotate
[1] TRUE
[1] "SpliceSites"
[1] "show"
[1] "plot"
[1] "plot"
[1] "initialize"
[1] "grid.plot"
[1] "grid.plot"
[1] "Probes"
[1] "initialize"
[1] "show"
[1] "plot"
[1] "plot"
[1] "grid.plot"
[1] "grid.plot"
[1] "SpliceSitesGenomic"
[1] "plot"
[1] TRUE
[1] "SpliceExprSet"
[1] "spliceSites"
[1] "spliceSites"
[1] "exprs"
[1] "exprs<-"
[1] "show"
[1] "plot"
[1] "grid.plot"
** help
>>> Building/Updating help pages for package 'splicegear'
Formats: text html latex example
Probes-class text html latex example
SpliceExprSet-class text html latex example
SpliceSites-class text html latex example
SpliceSitesGenomic-class text html latex example
as.data.frame.SpliceExprSet text html latex example
barplot.SpliceSites text html latex example
buildSpliceSites text html latex example
getRelSignStrength text html latex example
grid.helpers text html latex
grid.plot.SpliceSites text html latex example
isProbeOnSpliceSite text html latex example
matchprobes2Probes text html latex
plot.SpliceExprSet text html latex example
plot.SpliceSites text html latex example
plot.SpliceSitesGenomic text html latex example
sort.SpliceExprSet text html latex example
spliceset text html latex example
split.SpliceSites text html latex example
** building package indices ...
* DONE (splicegear)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'splicegear_1.6.0.tar.gz'