Package: hopach

Version: 1.8.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check hopach_1.8.0.tar.gz

RetCode: 0

Time: 213.3 seconds

Status: OK

CheckDir: hopach.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/hopach.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'hopach/DESCRIPTION' ... OK
* this is package 'hopach' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hopach' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating hopach-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating hopach-manual.tex ... OK
* checking hopach-manual.tex ... OK

* Installing *source* package 'hopach' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: cluster
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

** help
 >>> Building/Updating help pages for package 'hopach'
     Formats: text html latex example 
  boot2fuzzy                        text    html    latex   example
  bootplot                          text    html    latex   example
  bootstrap                         text    html    latex   example
  correlationordering               text    html    latex   example
  disscosangle                      text    html    latex   example
  distancematrix                    text    html    latex   example
  dplot                             text    html    latex   example
  golub                             text    html    latex
  hopach                            text    html    latex   example
  hopach.internal                   text    html    latex   example
  hopach2tree                       text    html    latex   example
  labelstomss                       text    html    latex   example
  makeoutput                        text    html    latex   example
  prune                             text    html    latex   example
** building package indices ...
* DONE (hopach)