Package: biocViews

Version: 1.2.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check biocViews_1.2.0.tar.gz

RetCode: 0

Time: 75.9 seconds

Status: OK

CheckDir: biocViews.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/biocViews.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'biocViews/DESCRIPTION' ... OK
* this is package 'biocViews' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biocViews' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating biocViews-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating biocViews-manual.tex ... OK
* checking biocViews-manual.tex ... OK

* Installing *source* package 'biocViews' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Loading required package: graph
Loading required package: RBGL
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

** help
 >>> Building/Updating help pages for package 'biocViews'
     Formats: text html latex example 
  BiocView-class                    text    html    latex
  Htmlized-class                    text    html    latex
  PackageDetail-class               text    html    latex   example
  RepositoryDetail-class            text    html    latex
  biocViewsVocab                    text    html    latex   example
  extractVignettes                  text    html    latex
  genReposControlFiles              text    html    latex
  getBiocSubViews                   text    html    latex   example
  getBiocViews                      text    html    latex   example
  getPacksAndViews                  text    html    latex
  getSubTerms                       text    html    latex   example
  htmlDoc                           text    html    latex
  htmlFilename                      text    html    latex
  htmlValue                         text    html    latex
  writeBiocViews                    text    html    latex
  writeHtmlDoc                      text    html    latex
  writePackageDetailHtml            text    html    latex
  writeRepositoryHtml               text    html    latex
  writeTopLevelView                 text    html    latex
  write_REPOSITORY                  text    html    latex
  write_SYMBOLS                     text    html    latex
  write_VIEWS                       text    html    latex
** building package indices ...
* DONE (biocViews)