Package: annotate

Version: 1.12.1

Command: /loc/biocbuild/1.9d/R/bin/R CMD build annotate

RetCode: 0

Time: 240.8 seconds

Status: OK

PackageFile: annotate_1.12.1.tar.gz

* checking for file 'annotate/DESCRIPTION' ... OK
* preparing 'annotate':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'annotate' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

** help
 >>> Building/Updating help pages for package 'annotate'
     Formats: text html latex example 
  ACCNUMStats                       text    html    latex   example
  GO2heatmap                        text    html    latex   example
  GOTerms-class                     text    html    latex   example
  GOmnplot                          text    html    latex   example
  HTMLPage-class                    text    html    latex   example
  LL2homology                       text    html    latex   example
  PMIDAmat                          text    html    latex   example
  PWAmat                            text    html    latex   example
  UniGeneQuery                      text    html    latex   example
  accessionToUID                    text    html    latex   example
  buildChromLocation                text    html    latex   example
  buildPubMedAbst                   text    html    latex   example
  chrCats                           text    html    latex   example
  chromLocation-class               text    html    latex   example
  compatibleVersions                text    html    latex   example
  dropECode                         text    html    latex   example
  findNeighbors                     text    html    latex   example
  genbank                           text    html    latex   example
  genelocator                       text    html    latex   example
  getEvidence                       text    html    latex   example
  getGOTerm                         text    html    latex   example
  getOntology                       text    html    latex   example
  getPMInfo                         text    html    latex   example
  getSYMBOL                         text    html    latex   example
  getSeq4Acc                        text    html    latex   example
  getTDRows                         text    html    latex
  hasGOannote                       text    html    latex   example
  hgByChroms                        text    html    latex   example
  hgCLengths                        text    html    latex   example
  hgu95AProbLocs                    text    html    latex
  hgu95Achroloc                     text    html    latex   example
  hgu95Achrom                       text    html    latex   example
  hgu95All                          text    html    latex   example
  hgu95Asym                         text    html    latex   example
  homoData-class                    text    html    latex   example
  htmlpage                          text    html    latex   example
  installDataPackage                text    html    latex   example
  locuslinkById                     text    html    latex   example
  locuslinkQuery                    text    html    latex   example
  makeAnchor                        text    html    latex   example
  neighborGeneFinder                text    html    latex   example
  p2LL                              text    html    latex   example
  pm.abstGrep                       text    html    latex   example
  pm.getabst                        text    html    latex   example
  pm.titles                         text    html    latex   example
  pmAbst2HTML                       text    html    latex   example
  pmid2MIAME                        text    html    latex   example
  pmidQuery                         text    html    latex   example
  probesByLL                        text    html    latex   example
  pubMedAbst-class                  text    html    latex   example
  pubmed                            text    html    latex   example
  readGEOAnn                        text    html    latex   example
  serializeEnv                      text    html    latex   example
  usedChromGenes                    text    html    latex   example
** building package indices ...
* DONE (annotate)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'annotate_1.12.1.tar.gz'