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| Package 142/188 | OS | Arch | BUILD | CHECK | BUILD BIN |
rama1.6.0Raphael Gottardo | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | [ OK ] | ||
| Windows Server 2003 | x86_64 | OK | OK | OK |
| Package: rama |
| Version: 1.6.0 |
| Command: /loc/biocbuild/1.9d/R/bin/R CMD check rama_1.6.0.tar.gz |
| RetCode: 0 |
| Time: 99.2 seconds |
| Status: OK |
| CheckDir: rama.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/1.9d/Rpacks/rama.Rcheck' * using R version 2.4.0 (2006-10-03) * checking for file 'rama/DESCRIPTION' ... OK * this is package 'rama' version '1.6.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'rama' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating rama-Ex.R ... OK * checking examples ... OK * creating rama-manual.tex ... OK * checking rama-manual.tex ... OK
rama.Rcheck/00install.out:
* Installing *source* package 'rama' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function 'mcmc_shift':
estimation_slice.c:122: warning: unused variable 'SSeps_sd_new'
estimation_slice.c:121: warning: unused variable 'SSeps_sd'
estimation_slice.c:117: warning: unused variable 'pi'
estimation_slice.c:116: warning: unused variable 'SS12'
estimation_slice.c:116: warning: unused variable 'SSR2'
estimation_slice.c:116: warning: unused variable 'SSR1'
estimation_slice.c:115: warning: unused variable 'dens_epsilon_new'
estimation_slice.c:115: warning: unused variable 'dens_epsilon'
estimation_slice.c:114: warning: unused variable 'l_epsilon_new'
estimation_slice.c:114: warning: unused variable 'l_epsilon'
estimation_slice.c:113: warning: unused variable 'lambda_eps2_new'
estimation_slice.c:113: warning: unused variable 'lambda_eps1_new'
estimation_slice.c: In function 'slice_sampling_lambda_eps':
estimation_slice.c:484: warning: suggest parentheses around comparison in operand of &
estimation_slice.c:493: warning: suggest parentheses around comparison in operand of &
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function 'mcmc':
ex_estimation_slice.c:144: warning: unused variable 'old_a'
ex_estimation_slice.c:143: warning: unused variable 'old_b'
ex_estimation_slice.c:138: warning: unused variable 'sum_res2'
ex_estimation_slice.c:137: warning: unused variable 'sum_res1'
ex_estimation_slice.c:119: warning: unused variable 'dens_t_new'
ex_estimation_slice.c:119: warning: unused variable 'dens_t'
ex_estimation_slice.c:112: warning: unused variable 'pi'
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c mean.sd.c -o mean.sd.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c reorder.c -o reorder.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c util.c -o util.o
util.c: In function 'qr_solve':
util.c:570: warning: implicit declaration of function 'dqrdc2_'
util.c:585: warning: implicit declaration of function 'dqrcf_'
util.c:549: warning: unused variable 'vmax'
util.c: In function 'inverse':
util.c:608: warning: unused variable 'j'
util.c: In function 'product_mat_vec':
util.c:655: warning: unused variable 'k'
util.c: In function 'slice_sampling_a':
util.c:752: warning: suggest parentheses around comparison in operand of |
util.c:752: warning: suggest parentheses around comparison in operand of &
util.c:759: warning: suggest parentheses around comparison in operand of &
util.c:766: warning: suggest parentheses around comparison in operand of &
util.c:736: warning: unused variable 'v'
util.c: In function 'slice_sampling_b':
util.c:826: warning: suggest parentheses around comparison in operand of |
util.c:826: warning: suggest parentheses around comparison in operand of &
util.c:833: warning: suggest parentheses around comparison in operand of &
util.c:840: warning: suggest parentheses around comparison in operand of &
util.c:809: warning: unused variable 'v'
util.c: In function 'slice_sampling_b2':
util.c:890: warning: suggest parentheses around comparison in operand of &
util.c:898: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a2':
util.c:945: warning: suggest parentheses around comparison in operand of &
util.c:953: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_rho':
util.c:999: warning: suggest parentheses around comparison in operand of |
util.c:999: warning: suggest parentheses around comparison in operand of &
util.c:1006: warning: suggest parentheses around comparison in operand of &
util.c:1013: warning: suggest parentheses around comparison in operand of &
util.c:983: warning: unused variable 'v'
util.c: In function 'slice_sampling_rho2':
util.c:1058: warning: suggest parentheses around comparison in operand of &
util.c:1067: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_shift':
util.c:1142: warning: suggest parentheses around comparison in operand of |
util.c:1142: warning: suggest parentheses around comparison in operand of &
util.c:1149: warning: suggest parentheses around comparison in operand of &
util.c:1156: warning: suggest parentheses around comparison in operand of &
util.c:1123: warning: unused variable 'v'
util.c: In function 'slice_sampling_shift2':
util.c:1223: warning: suggest parentheses around comparison in operand of &
util.c:1231: warning: suggest parentheses around comparison in operand of &
util.c:1205: warning: unused variable 'v'
util.c: In function 'slice_sampling_p':
util.c:1371: warning: suggest parentheses around comparison in operand of &
util.c:1379: warning: suggest parentheses around comparison in operand of &
gcc -G -L/usr/local/lib -o rama.so estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'rama'
Formats: text html latex example
arrange.row text html latex example
est.shift text html latex example
fit.model text html latex example
hiv text html latex
is.row.na text html latex example
ls.effect text html latex example
mat.mean text html latex example
ratio.plot text html latex example
weight.plot text html latex example
** building package indices ...
* DONE (rama)