Package: goTools

Version: 1.6.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check goTools_1.6.0.tar.gz

RetCode: 0

Time: 358.6 seconds

Status: WARNINGS

CheckDir: goTools.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/goTools.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'goTools/DESCRIPTION' ... OK
* this is package 'goTools' version '1.6.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  probeType
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'goTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating goTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating goTools-manual.tex ... OK
* checking goTools-manual.tex ... OK

WARNING: There was 1 warning, see
  /loc/biocbuild/1.9d/Rpacks/goTools.Rcheck/00check.log
for details

* Installing *source* package 'goTools' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: annotate
Loading required package: GO
** help
 >>> Building/Updating help pages for package 'goTools'
     Formats: text html latex example 
  EndNodeList                       text    html    latex   example
  goTools-internal                  text    html    latex
  ontoCompare                       text    html    latex   example
  probeID                           text    html    latex
** building package indices ...
* DONE (goTools)