Package: OrderedList

Version: 1.6.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check OrderedList_1.6.0.tar.gz

RetCode: 0

Time: 347.7 seconds

Status: OK

CheckDir: OrderedList.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/OrderedList.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'OrderedList/DESCRIPTION' ... OK
* this is package 'OrderedList' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'OrderedList' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating OrderedList-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating OrderedList-manual.tex ... OK
* checking OrderedList-manual.tex ... OK

* Installing *source* package 'OrderedList' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: twilight
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'OrderedList'
     Formats: text html latex example 
  OL.data                           text    html    latex
  OL.result                         text    html    latex   example
  OrderedList                       text    html    latex   example
  check.test.args                   text    html    latex
  compareLists                      text    html    latex   example
  getOverlap                        text    html    latex   example
  overlap                           text    html    latex
  plot.OrderedList                  text    html    latex   example
  prepareData                       text    html    latex   example
  preparePermutations               text    html    latex
  print.OrderedList                 text    html    latex   example
  scoreOrderComparison              text    html    latex
  scoreRankings                     text    html    latex
  shuffledRandomScores              text    html    latex
** building package indices ...
* DONE (OrderedList)