Package: LPE

Version: 1.8.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check LPE_1.8.0.tar.gz

RetCode: 0

Time: 166.2 seconds

Status: OK

CheckDir: LPE.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/LPE.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'LPE/DESCRIPTION' ... OK
* this is package 'LPE' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LPE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating LPE-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating LPE-manual.tex ... OK
* checking LPE-manual.tex ... OK

* Installing *source* package 'LPE' ...
** R
** data
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'LPE'
     Formats: text html latex example 
  Ley                               text    html    latex
  am.trans                          text    html    latex   example
  baseOlig.error                    text    html    latex   example
  baseOlig.error.step1              text    html    latex   example
  baseOlig.error.step2              text    html    latex   example
  fdr.adjust                        text    html    latex   example
  fixbounds.predict.smooth.spline   text    html    latex   example
  iqr                               text    html    latex   example
  lowess.normalize                  text    html    latex   example
  lpe                               text    html    latex   example
  mt.rawp2adjp                      text    html    latex   example
  n.genes.adaptive.int              text    html    latex   example
  permute                           text    html    latex   example
  preprocess                        text    html    latex   example
  quan.norm                         text    html    latex   example
  quartile.normalize                text    html    latex   example
  resamp.adj                        text    html    latex   example
** building package indices ...
* DONE (LPE)