* checking for file 'vsn/DESCRIPTION' ... OK
* preparing 'vsn':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'vsn' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c vsn.c -o vsn.o
gcc -shared -L/usr/local/lib -o vsn.so vsn.o
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'vsn'
Formats: text html latex example
getIntensityMatrix text html latex example
kidney text html latex example
lymphoma text html latex example
meanSdPlot text html latex example
normalize.AffyBatch.vsn text html latex example
sagmbSimulateData text html latex example
vsn text html latex example
vsnPlotPar text html latex example
vsnh text html latex example
** building package indices ...
* DONE (vsn)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: affyio
Loading required package: limma
Loading required package: survival
Loading required package: splines
Error: chunk 16 (label=affy1)
Error in update.default(pbt) : need an object with call component
Error in buildVignettes(dir = ".") : Error: chunk 16 (label=affy1)
Error in update.default(pbt) : need an object with call component
Execution halted