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Package 78/205OSArchBUILDCHECKBUILD BIN

globaltest

4.3.5

Jelle Goeman		Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 9.2) i686[ ERROR ]skipped
Solaris 2.9 sparc ERROR skipped
Linux (SUSE 10.0) x86_64 ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows XP i686 ERROR skippedskipped
Mac OS X (10.4.6) i686 OK  OK 
Package: globaltest
Version: 4.3.5
Command: /loc/biocbuild/1.9d/R/bin/R CMD build globaltest
RetCode: 1
Time: 196.9 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'globaltest/DESCRIPTION' ... OK
* preparing 'globaltest':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'globaltest' ...
** R
** data
** inst
** save image
Loading required package: multtest

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival

Loading required package: splines

Creating a new generic function for 'fitted.values' in 'globaltest'
Creating a new generic function for 'residuals' in 'globaltest'
** help
 >>> Building/Updating help pages for package 'globaltest'
     Formats: text html latex example 
  GOstructure                       text    html    latex
  annotation.vandeVijver            text    html    latex
  checkerboard                      text    html    latex   example
  geneplot                          text    html    latex   example
  globaltest                        text    html    latex   example
  gostructure.vandeVijver           text    html    latex
  gt.barplot-class                  text    html    latex
  gt.result-class                   text    html    latex
  gtGO                              text    html    latex   example
  mlogit                            text    html    latex   example
  multtest                          text    html    latex   example
  permutations                      text    html    latex   example
  regressionplot                    text    html    latex   example
  sampleplot                        text    html    latex   example
  sampling                          text    html    latex   example
  vandeVijver                       text    html    latex
** building package indices ...
* DONE (globaltest)
* creating vignettes ... ERROR
Loading required package: Biobase


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: multtest

Loading required package: survival

Loading required package: splines

Loading required package: graph

Loading required package: Ruuid

Loading required package: annotate

Loading required package: RBGL

Loading required package: genefilter

Loading required package: Category

Loading required package: hgu95av2

Loading required package: geneplotter

Warning message:
Loglik converged before variable  1 ; beta may be infinite.  in: fitter(X, Y, strats, offset, init, control, weights = weights,  

Error:  chunk 39 (label=geneplot) 
Error in xy.coords(x, y, xlabel, ylabel, log) : 
	'x' and 'y' lengths differ
Error in buildVignettes(dir = ".") : Error:  chunk 39 (label=geneplot) 
Error in xy.coords(x, y, xlabel, ylabel, log) : 
	'x' and 'y' lengths differ
Execution halted