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affyQCReport

1.11.1

Craig Parman
Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 9.2) i686[ ERROR ]skipped
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows XP i686 ERROR skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: affyQCReport
Version: 1.11.1
Command: /loc/biocbuild/1.9d/R/bin/R CMD build affyQCReport
RetCode: 1
Time: 40.1 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'affyQCReport/DESCRIPTION' ... OK
* preparing 'affyQCReport':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'affyQCReport' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'affyQCReport'
     Formats: text html latex example 
  QCReport                          text    html    latex   example
  borderQC1                         text    html    latex   example
  borderQC2                         text    html    latex   example
  correlationPlot                   text    html    latex   example
  signalDist                        text    html    latex   example
  titlePage                         text    html    latex   example
** building package indices ...
* DONE (affyQCReport)
* creating vignettes ... ERROR
Loading required package: Biobase


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy

Loading required package: affyio

Loading required package: simpleaffy

Loading required package: genefilter

Loading required package: survival

Loading required package: splines


Error:  chunk 7 
Error in function (classes, fdef, mtable)  : 
	unable to find an inherited method for function "pData", for signature "phenoData"
Error in buildVignettes(dir = ".") : Error:  chunk 7 
Error in function (classes, fdef, mtable)  : 
	unable to find an inherited method for function "pData", for signature "phenoData"
Execution halted