Package: gcrma

Version: 2.5.1

Command: E:\hpages\1.9d\R\bin\R.exe CMD check gcrma_2.5.1.tar.gz

RetCode: 0

Time: 242.3 seconds

Status: WARNINGS

CheckDir: gcrma.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'E:/hpages/1.9d/Rpacks/gcrma.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'gcrma/DESCRIPTION' ... OK
* this is package 'gcrma' version '2.5.1'
* checking package dependencies ... WARNING
'::' or ':::' imports not declared from:
  Biobase
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'gcrma' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating gcrma-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gcrma-manual.tex ... OK
* checking gcrma-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/hpages/1.9d/Rpacks/gcrma.Rcheck/00check.log
for details

installing R.css in E:/hpages/1.9d/Rpacks/gcrma.Rcheck


---------- Making package gcrma ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making baseProfile.d from baseProfile.c
making computeAffinities.d from computeAffinities.c
making postmean.d from postmean.c
gcc   -Ie:/hpages/1.9d/R/include  -Wall -O2 -std=gnu99   -c baseProfile.c -o baseProfile.o
baseProfile.c: In function `gcrma_getSeq2':
baseProfile.c:14: warning: unused variable `nx'
gcc   -Ie:/hpages/1.9d/R/include  -Wall -O2 -std=gnu99   -c computeAffinities.c -o computeAffinities.o
gcc   -Ie:/hpages/1.9d/R/include  -Wall -O2 -std=gnu99   -c postmean.c -o postmean.o
windres --include-dir e:/hpages/1.9d/R/include  -i gcrma_res.rc -o gcrma_res.o
gcc  -shared -s  -o gcrma.dll gcrma.def baseProfile.o computeAffinities.o postmean.o gcrma_res.o  -Le:/hpages/1.9d/R/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'gcrma'
     Formats: text html latex example chm 
  affinity.spline.coefs             text    html    latex           chm
  bg.adjust.affinities              text    html    latex           chm
  bg.adjust.gcrma                   text    html    latex   example chm
  bg.parameters.ns                  text    html    latex           chm
  compute.affinities                text    html    latex           chm
  fast.bkg                          text    html    latex           chm
  gcrma                             text    html    latex   example chm
  gcrma.engine                      text    html    latex   example chm
  gcrma.engine2                     text    html    latex   example chm
  getCDF                            text    html    latex           chm
  justGCRMA                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\hpages\1.9d\Rpacks\gcrma.Rcheck\00_pkg_src\gcrma\chm\gcrma.chm


Compile time: 0 minutes, 0 seconds
12	Topics
44	Local links
0	Internet links
1	Graphic


Created e:\hpages\1.9d\Rpacks\gcrma.Rcheck\00_pkg_src\gcrma\chm\gcrma.chm, 32,110 bytes
Compression decreased file by 22,643 bytes.
  preparing package gcrma for lazy loading
Loading required package: affy

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio

Loading required package: matchprobes

  adding MD5 sums

* DONE (gcrma)