* checking for file 'affyPLM/DESCRIPTION' ... OK
* preparing 'affyPLM':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in E:/hpages/1.9d/tmpdir/Rinst327235763
---------- Making package affyPLM ------------
adding build stamp to DESCRIPTION
making DLL ...
making LESN.d from LESN.c
making PLM_modelmatrix.d from PLM_modelmatrix.c
making R_rlm_interfaces.d from R_rlm_interfaces.c
making SCAB.d from SCAB.c
making avg_log.d from avg_log.c
making biweight.d from biweight.c
making chipbackground.d from chipbackground.c
making common_types.d from common_types.c
making do_PLMrlm.d from do_PLMrlm.c
making do_PLMrma.d from do_PLMrma.c
making do_PLMthreestep.d from do_PLMthreestep.c
making idealmismatch.d from idealmismatch.c
making lm.d from lm.c
making lm_threestep.d from lm_threestep.c
making log_avg.d from log_avg.c
making matrix_functions.d from matrix_functions.c
making medianPM.d from medianPM.c
making median_logPM.d from median_logPM.c
making medianpolish.d from medianpolish.c
making nthLargestPM.d from nthLargestPM.c
making preprocess.d from preprocess.c
making psi_fns.d from psi_fns.c
making qnorm.d from qnorm.c
making qnorm_probeset.d from qnorm_probeset.c
making read_rmaexpress.d from read_rmaexpress.c
making rlm.d from rlm.c
making rlm_PLM.d from rlm_PLM.c
making rlm_anova.d from rlm_anova.c
making rlm_se.d from rlm_se.c
making rlm_threestep.d from rlm_threestep.c
making rmaPLM_pseudo.d from rmaPLM_pseudo.c
making rma_PLM.d from rma_PLM.c
making rma_background2.d from rma_background2.c
making rma_common.d from rma_common.c
making scaling.d from scaling.c
making threestep.d from threestep.c
making threestep_PLM.d from threestep_PLM.c
making threestep_common.d from threestep_common.c
making threestep_summary.d from threestep_summary.c
making threestep_summary_methods.d from threestep_summary_methods.c
making transfns.d from transfns.c
making weightedkerneldensity.d from weightedkerneldensity.c
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c LESN.c -o LESN.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c PLM_modelmatrix.c -o PLM_modelmatrix.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c R_rlm_interfaces.c -o R_rlm_interfaces.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c SCAB.c -o SCAB.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c avg_log.c -o avg_log.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c biweight.c -o biweight.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c chipbackground.c -o chipbackground.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c common_types.c -o common_types.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c do_PLMrlm.c -o do_PLMrlm.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c do_PLMrma.c -o do_PLMrma.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c do_PLMthreestep.c -o do_PLMthreestep.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c idealmismatch.c -o idealmismatch.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c lm.c -o lm.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c lm_threestep.c -o lm_threestep.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c log_avg.c -o log_avg.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c matrix_functions.c -o matrix_functions.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c medianPM.c -o medianPM.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c median_logPM.c -o median_logPM.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c medianpolish.c -o medianpolish.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c nthLargestPM.c -o nthLargestPM.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c preprocess.c -o preprocess.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c psi_fns.c -o psi_fns.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c qnorm.c -o qnorm.o
qnorm.c: In function `qnorm_c_determine_target':
qnorm.c:1521: warning: unused variable `ind'
qnorm.c:1522: warning: unused variable `dimat'
qnorm.c:1526: warning: unused variable `ranks'
qnorm.c: In function `R_qnorm_using_target':
qnorm.c:1604: warning: unused variable `dim2'
qnorm.c: In function `qnorm_c_determine_target':
qnorm.c:1596: warning: control reaches end of non-void function
qnorm.c: At top level:
qnorm.c:116: warning: 'min' defined but not used
qnorm.c:389: warning: 'qnorm_c_old' defined but not used
qnorm.c:463: warning: 'qnorm_robust_c_old' defined but not used
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c qnorm_probeset.c -o qnorm_probeset.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c read_rmaexpress.c -o read_rmaexpress.o
read_rmaexpress.c: In function `read_rmaexpress_header':
read_rmaexpress.c:249: warning: unused variable `dimnames'
read_rmaexpress.c: In function `gz_read_rmaexpress_header':
read_rmaexpress.c:431: warning: unused variable `dimnames'
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rlm.c -o rlm.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rlm_PLM.c -o rlm_PLM.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rlm_anova.c -o rlm_anova.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rlm_se.c -o rlm_se.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rlm_threestep.c -o rlm_threestep.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rma_PLM.c -o rma_PLM.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rma_background2.c -o rma_background2.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c rma_common.c -o rma_common.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c scaling.c -o scaling.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c threestep.c -o threestep.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c threestep_PLM.c -o threestep_PLM.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c threestep_common.c -o threestep_common.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c threestep_summary.c -o threestep_summary.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c threestep_summary_methods.c -o threestep_summary_methods.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c transfns.c -o transfns.o
gcc -Ie:/hpages/1.9d/R/src/extra/zlib -DHAVE_ZLIB -Ie:/hpages/1.9d/R/include -Wall -O2 -std=gnu99 -c weightedkerneldensity.c -o weightedkerneldensity.o
windres --include-dir e:/hpages/1.9d/R/include -i affyPLM_res.rc -o affyPLM_res.o
gcc -shared -s -o affyPLM.dll affyPLM.def LESN.o PLM_modelmatrix.o R_rlm_interfaces.o SCAB.o avg_log.o biweight.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm.o lm_threestep.o log_avg.o matrix_functions.o medianPM.o median_logPM.o medianpolish.o nthLargestPM.o preprocess.o psi_fns.o qnorm.o qnorm_probeset.o read_rmaexpress.o rlm.o rlm_PLM.o rlm_anova.o rlm_se.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_background2.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o weightedkerneldensity.o affyPLM_res.o -Le:/hpages/1.9d/R/bin -Le:/hpages/1.9d/R/bin -lRlapack -Le:/hpages/1.9d/R/bin -lRblas -Le:/hpages/1.9d/R/src/extra/zlib -lz -lR
matrix_functions.o:matrix_functions.c:(.text+0x1d): undefined reference to `R_moduleCdynload'
collect2: ld returned 1 exit status
make[3]: *** [affyPLM.dll] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-affyPLM] Error 2
*** Installation of affyPLM failed ***
Removing 'E:/hpages/1.9d/tmpdir/Rinst327235763/affyPLM'
ERROR
Installation failed.
Removing 'E:/hpages/1.9d/tmpdir/Rinst327235763'