Package: Rgraphviz

Version: 1.11.10

Command: E:\hpages\1.9d\R\bin\R.exe CMD check Rgraphviz_1.11.10.tar.gz

RetCode: 0

Time: 170.2 seconds

Status: WARNINGS

CheckDir: Rgraphviz.Rcheck

Warnings: 3

* checking for working latex ... OK
* using log directory 'E:/hpages/1.9d/Rpacks/Rgraphviz.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* this is package 'Rgraphviz' version '1.11.10'
* checking package dependencies ... WARNING
package 'methods' is used but not declared
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'Rgraphviz' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... WARNING
Loading required package: graph

Loading required package: Ruuid

Loading required package: methods

Error in inherits(x, "factor") : could not find function "installed.packages"
Error: .onLoad failed in 'loadNamespace' for 'Ruuid'
Error: package 'Ruuid' could not be loaded
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking whether the name space can be loaded with stated dependencies ... WARNING
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Error in .asEnvironmentPackage(where) : Package 'methods' is not loaded
Error: unable to load R code in package 'Ruuid'
Error: unable to load R code in package 'Rgraphviz'
Execution halted

A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Rgraphviz-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Rgraphviz-manual.tex ... OK
* checking Rgraphviz-manual.tex ... OK

WARNING: There were 3 warnings, see
  E:/hpages/1.9d/Rpacks/Rgraphviz.Rcheck/00check.log
for details

installing R.css in E:/hpages/1.9d/Rpacks/Rgraphviz.Rcheck


---------- Making package Rgraphviz ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making Rgraphviz.d from Rgraphviz.c
making RgraphvizInit.d from RgraphvizInit.c
gcc  -I../graphviz-win32/include -DGRAPHVIZGT_1_16 -DWin32 -Ie:/hpages/1.9d/R/include  -Wall -O2 -std=gnu99   -c Rgraphviz.c -o Rgraphviz.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:32,
                 from Rgraphviz.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:15,
                 from Rgraphviz.c:1:
e:/hpages/1.9d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
Rgraphviz.c: In function `getListElement':
Rgraphviz.c:56: warning: implicit declaration of function `Rf_type2char'
Rgraphviz.c: In function `Rgraphviz_doLayout':
Rgraphviz.c:415: warning: implicit declaration of function `circo_layout'
Rgraphviz.c: At top level:
common.h:46: warning: 'gvc' defined but not used
gcc  -I../graphviz-win32/include -DGRAPHVIZGT_1_16 -DWin32 -Ie:/hpages/1.9d/R/include  -Wall -O2 -std=gnu99   -c RgraphvizInit.c -o RgraphvizInit.o
In file included from ../graphviz-win32/include/render.h:53,
                 from common.h:32,
                 from RgraphvizInit.c:1:
../graphviz-win32/include/macros.h:41:1: warning: "NEW" redefined
In file included from common.h:15,
                 from RgraphvizInit.c:1:
e:/hpages/1.9d/R/include/Rdefines.h:143:1: warning: this is the location of the previous definition
common.h:46: warning: 'gvc' defined but not used
windres --include-dir e:/hpages/1.9d/R/include  -i Rgraphviz_res.rc -o Rgraphviz_res.o
gcc  -shared -s  -o Rgraphviz.dll Rgraphviz.def Rgraphviz.o RgraphvizInit.o Rgraphviz_res.o  -Le:/hpages/1.9d/R/bin -L../graphviz-win32/lib -ldotgen -ltwopigen -lcircogen -lneatogen -lpack -lcommon -lpathplan -lgvrender -lgvgd -lgraph -lagraph -lcdt     -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: graph

Loading required package: Ruuid

Loading required package: geneplotter

Loading required package: annotate

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for 'lines' in 'Rgraphviz'
Creating a new generic function for 'plot' in 'Rgraphviz'
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'Rgraphviz'
     Formats: text html latex example chm 
  AgEdge-class                      text    html    latex   example chm
  AgNode-class                      text    html    latex   example chm
  AgTextLabel-class                 text    html    latex   example chm
  BezierCurve-class                 text    html    latex   example chm
  GraphvizAttributes                text    html    latex   example chm
  GraphvizLayouts                   text    html    latex   example chm
  Ragraph-class                     text    html    latex   example chm
  agopen                            text    html    latex   example chm
  agwrite                           text    html    latex   example chm
  boundingBox-class                 text    html    latex   example chm
  buildNodeList                     text    html    latex   example chm
  getDefaultAttrs                   text    html    latex   example chm
  graphvizVersion                   text    html    latex   example chm
  imageMap                          text    html    latex   example chm
  layoutGraph                       text    html    latex   example chm
  makeNodeAttrs                     text    html    latex   example chm
  pEdge-class                       text    html    latex   example chm
  pNode-class                       text    html    latex   example chm
  pieGlyph                          text    html    latex   example chm
  plot-methods                      text    html    latex   example chm
  removedEdges                      text    html    latex   example chm
  toDot-methods                     text    html    latex   example chm
  xyPoint-class                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\hpages\1.9d\Rpacks\Rgraphviz.Rcheck\00_pkg_src\Rgraphviz\chm\Rgraphviz.chm


Compile time: 0 minutes, 0 seconds
24	Topics
245	Local links
6	Internet links
1	Graphic


Created e:\hpages\1.9d\Rpacks\Rgraphviz.Rcheck\00_pkg_src\Rgraphviz\chm\Rgraphviz.chm, 74,422 bytes
Compression decreased file by 94,262 bytes.
  adding MD5 sums

* DONE (Rgraphviz)