Package: MCRestimate

Version: 1.7.2

Command: E:\hpages\1.9d\R\bin\R.exe CMD check MCRestimate_1.7.2.tar.gz

RetCode: 1

Time: 62.1 seconds

Status: ERROR

CheckDir: MCRestimate.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'E:/hpages/1.9d/Rpacks/MCRestimate.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'MCRestimate/DESCRIPTION' ... OK
* this is package 'MCRestimate' version '1.7.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MCRestimate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MCRestimate-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'MCRestimate-Ex.R' failed.
The error most likely occurred in:

> ### * MCRconfusion
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: MCRconfusion
> ### Title: Summary tables for MCRestimate objects
> ### Aliases: MCRconfusion MCRwrongsamples
> 
> 
> ### ** Examples
> 
> library(MCRestimate)
> library(golubEsets)
> data(Golub_Train)
> exSet <- Golub_Train[1:500,]
Error in featureData(x) : no slot of name "featureData" for this object of class "ExpressionSet"
Execution halted

installing R.css in E:/hpages/1.9d/Rpacks/MCRestimate.Rcheck


---------- Making package MCRestimate ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: e1071

Loading required package: class

Loading required package: pamr

Loading required package: randomForest

randomForest 4.5-16 
Type rfNews() to see new features/changes/bug fixes.
Loading required package: RColorBrewer

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: golubEsets

  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'MCRestimate'
     Formats: text html latex example chm 
  ClassifierBuild                   text    html    latex   example chm
  MCRconfusion                      text    html    latex   example chm
  MCRestimate                       text    html    latex   example chm
  MCRestimateMerge                  text    html    latex   example chm
  PLR                               text    html    latex   example chm
  PLR.add.fkt                       text    html    latex   example chm
  SVM.OVA.wrap                      text    html    latex   example chm
  class.factor.format               text    html    latex   example chm
  gene.reduction.fkt                text    html    latex   example chm
  important.variable.names          text    html    latex   example chm
  intersectList                     text    html    latex   example chm
  plot.MCRestimate                  text    html    latex   example chm
  replace.NA                        text    html    latex   example chm
  select.NA.elements                text    html    latex   example chm
  whatiscorrect                     text    html    latex   example chm
  wrapper.fkt                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\hpages\1.9d\Rpacks\MCRestimate.Rcheck\00_pkg_src\MCRestimate\chm\MCRestimate.chm


Compile time: 0 minutes, 0 seconds
17	Topics
59	Local links
0	Internet links
1	Graphic


Created e:\hpages\1.9d\Rpacks\MCRestimate.Rcheck\00_pkg_src\MCRestimate\chm\MCRestimate.chm, 36,574 bytes
Compression decreased file by 27,563 bytes.
  adding MD5 sums

* DONE (MCRestimate)