CHECK report for webbioc on lemming

* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/webbioc.Rcheck' * using R version 2.4.0 alpha (2006-09-10 r39242) * checking for file 'webbioc/DESCRIPTION' ... OK * this is package 'webbioc' version '1.5.0' * checking package dependencies ... WARNING 'library' or 'require' calls not declared from: modreg See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'webbioc' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating webbioc-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating webbioc-manual.tex ... OK * checking webbioc-manual.tex ... OK WARNING: There was 1 warning, see D:/biocbld/1.9d/Rpacks/webbioc.Rcheck/00check.log for details

installing R.css in D:/biocbld/1.9d/Rpacks/webbioc.Rcheck ---------- Making package webbioc ------------ adding build stamp to DESCRIPTION installing R files save image Loading required package: affy Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()' or start with 'help(Biobase)'. For details on reading vignettes, see the openVignette help page. Loading required package: affyio Loading required package: multtest Loading required package: survival Loading required package: splines Loading required package: annaffy Loading required package: GO Loading required package: KEGG Loading required package: vsn Loading required package: gcrma Loading required package: matchprobes Loading required package: reposTools [1] FALSE Warning message: there is no package called 'reposTools' in: library(package, lib.loc = lib.loc, character.only = TRUE, logical = TRUE, installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'webbioc' Formats: text html latex example chm installReps text html latex chm mt.wrapper text html latex chm qplot text html latex chm qvalue text html latex chm qwrite text html latex chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\1.9d\Rpacks\webbioc.Rcheck\00_pkg_src\webbioc\chm\webbioc.chm Compile time: 0 minutes, 0 seconds 6 Topics 10 Local links 3 Internet links 1 Graphic Created d:\biocbld\1.9d\Rpacks\webbioc.Rcheck\00_pkg_src\webbioc\chm\webbioc.chm, 23,324 bytes Compression increased file by 2,456 bytes. adding MD5 sums * DONE (webbioc)

Package 201/205	OS	Arch	BUILD	CHECK	BUILD BIN
webbioc 1.5.0 Colin A. Smith	Linux (SUSE 9.2)	x86_64	OK	WARNINGS
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	OK	OK
	Linux (SUSE 10.0)	x86_64	OK	WARNINGS
	Windows Server 2003	x86_64	OK	[ WARNINGS ]	OK
	Windows XP	i686	OK	WARNINGS	skipped
	Mac OS X (10.4.6)	i686	OK	WARNINGS

webbioc

1.5.0

Command output