* checking for file 'goTools/DESCRIPTION' ... OK
* preparing 'goTools':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.9d/tmpdir/Rinst283658618
---------- Making package goTools ------------
adding build stamp to DESCRIPTION
installing R files
save image
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: annotate
Loading required package: GO
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'goTools'
Formats: text html latex example chm
EndNodeList text html latex example chm
goTools-internal text html latex chm
ontoCompare text html latex example chm
probeID text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\goTools\chm\goTools.chm
Compile time: 0 minutes, 0 seconds
5 Topics
26 Local links
0 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\goTools\chm\goTools.chm, 19,748 bytes
Compression increased file by 1,354 bytes.
adding MD5 sums
* DONE (goTools)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: annotate
Loading required package: GO
[1] "Starting ontoCompare..."
[1] "Number of lists > 1"
[1] "Using method: TGenes"
[1] "Starting ontoCompare..."
[1] "Number of lists > 1"
[1] "Using method: TGenes"
[1] "Starting ontoCompare..."
[1] 60160 2
[1] "Number of lists = 1"
[1] "Using method: TIDS"
[1] "Starting ontoCompare..."
[1] 60160 2
[1] "Number of lists = 1"
[1] "Using method: TIDS"
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goTools.tex:339: ontoPlotEg1.pdf
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texi2dvi: pdflatex exited with bad status, quitting.
texi2dvi: see "goTools.log" for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
running texi2dvi on 'goTools.tex' failed
Execution halted