Package: gaggle

Version: 1.1.5

Command: D:\biocbld\1.9d\R\bin\R.exe CMD check gaggle_1.1.5.tar.gz

RetCode: 0

Time: 92.2 seconds

Status: WARNINGS

CheckDir: gaggle.Rcheck

Warnings: 2

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/gaggle.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'gaggle/DESCRIPTION' ... OK
* this is package 'gaggle' version '1.1.5'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaggle' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... WARNING
Loading required package: rJava

Loading required package: methods

Loading required package: Ruuid

Error in inherits(x, "factor") : could not find function "installed.packages"
Error: .onLoad failed in 'loadNamespace' for 'Ruuid'
Error: package 'Ruuid' could not be loaded
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking whether the name space can be loaded with stated dependencies ... WARNING
Error in .asEnvironmentPackage(where) : Package 'methods' is not loaded
Error: unable to load R code in package 'Ruuid'
Execution halted

A namespace must be able to be loaded with just the base namespace loaded:
otherwise if the namespace gets loaded by a saved object, the session will
be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating gaggle-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gaggle-manual.tex ... OK
* checking gaggle-manual.tex ... OK

WARNING: There were 2 warnings, see
  D:/biocbld/1.9d/Rpacks/gaggle.Rcheck/00check.log
for details

installing R.css in D:/biocbld/1.9d/Rpacks/gaggle.Rcheck


---------- Making package gaggle ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'gaggle'
     Formats: text html latex example chm 
  broadcast                         text    html    latex           chm
  gaggleInit                        text    html    latex           chm
  geese                             text    html    latex           chm
  getCluster                        text    html    latex           chm
  getHashMap                        text    html    latex           chm
  getMatrix                         text    html    latex           chm
  getNameList                       text    html    latex           chm
  getNetwork                        text    html    latex           chm
  getSpecies                        text    html    latex           chm
  getTargetGoose                    text    html    latex           chm
  hideGoose                         text    html    latex           chm
  setSpecies                        text    html    latex           chm
  setTargetGoose                    text    html    latex           chm
  showGoose                         text    html    latex           chm
  testGagglePackage                 text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\gaggle.Rcheck\00_pkg_src\gaggle\chm\gaggle.chm


Compile time: 0 minutes, 0 seconds
16	Topics
72	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\gaggle.Rcheck\00_pkg_src\gaggle\chm\gaggle.chm, 24,753 bytes
Compression decreased file by 8,457 bytes.
  adding MD5 sums

* DONE (gaggle)