Package: apComplex

Version: 1.7.1

Command: D:\biocbld\1.9d\R\bin\R.exe CMD check apComplex_1.7.1.tar.gz

RetCode: 0

Time: 120.4 seconds

Status: WARNINGS

CheckDir: apComplex.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/apComplex.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'apComplex/DESCRIPTION' ... OK
* this is package 'apComplex' version '1.7.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'apComplex' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... WARNING
Loading required package: graph

Loading required package: Ruuid

Loading required package: methods

Error in inherits(x, "factor") : could not find function "installed.packages"
Error: .onLoad failed in 'loadNamespace' for 'Ruuid'
Error: package 'Ruuid' could not be loaded
Execution halted

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating apComplex-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating apComplex-manual.tex ... OK
* checking apComplex-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/1.9d/Rpacks/apComplex.Rcheck/00check.log
for details

installing R.css in D:/biocbld/1.9d/Rpacks/apComplex.Rcheck


---------- Making package apComplex ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'apComplex'
     Formats: text html latex example chm 
  HMSPCI                            text    html    latex   example chm
  Krogan                            text    html    latex   example chm
  LCdelta                           text    html    latex   example chm
  MBMEcHMSPCI                       text    html    latex   example chm
  MBMEcKrogan                       text    html    latex   example chm
  MBMEcTAP                          text    html    latex   example chm
  TAP                               text    html    latex   example chm
  apEX                              text    html    latex   example chm
  bhmaxSubgraph                     text    html    latex   example chm
  findComplexes                     text    html    latex   example chm
  gavinBP2006                       text    html    latex   example chm
  kroganBPMat2006                   text    html    latex   example chm
  mergeComplexes                    text    html    latex   example chm
  reduceMat                         text    html    latex   example chm
  sortComplexes                     text    html    latex   example chm
  vecInMat                          text    html    latex   example chm
  yNameTAP                          text    html    latex   example chm
  yTAP                              text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\apComplex.Rcheck\00_pkg_src\apComplex\chm\apComplex.chm


Compile time: 0 minutes, 0 seconds
19	Topics
94	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\apComplex.Rcheck\00_pkg_src\apComplex\chm\apComplex.chm, 35,458 bytes
Compression decreased file by 27,555 bytes.
  adding MD5 sums

* DONE (apComplex)