Back to the "Multiple platform build/check report"
| Package 15/205 | OS | Arch | BUILD | CHECK | BUILD BIN |
annaffy1.5.2Colin A. Smith | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | WARNINGS | ||
| Linux (SUSE 10.0) | x86_64 | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | [ WARNINGS ] | OK | |
| Windows XP | i686 | OK | WARNINGS | OK | |
| Mac OS X (10.4.6) | i686 | OK | WARNINGS |
| Package: annaffy |
| Version: 1.5.2 |
| Command: D:\biocbld\1.9d\R\bin\R.exe CMD check annaffy_1.5.2.tar.gz |
| RetCode: 0 |
| Time: 777.2 seconds |
| Status: WARNINGS |
| CheckDir: annaffy.Rcheck |
| Warnings: 2 |
* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/annaffy.Rcheck' * using R version 2.4.0 alpha (2006-09-10 r39242) * checking for file 'annaffy/DESCRIPTION' ... OK * this is package 'annaffy' version '1.5.2' * checking package dependencies ... WARNING package 'methods' is used but not declared See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'annaffy' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating annaffy-Ex.R ... OK * checking examples ... WARNING Found the following significant warnings: Warning: 'hgu95av2LOCUSID' is deprecated. Deprecated functions may be defunct as soon as of the next release of R. See ?Deprecated. * checking package vignettes in 'inst/doc' ... OK * creating annaffy-manual.tex ... OK * checking annaffy-manual.tex ... OK WARNING: There were 2 warnings, see D:/biocbld/1.9d/Rpacks/annaffy.Rcheck/00check.log for details
annaffy.Rcheck/00install.out:
installing R.css in D:/biocbld/1.9d/Rpacks/annaffy.Rcheck
---------- Making package annaffy ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
save image
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: GO
Loading required package: KEGG
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'annaffy'
Formats: text html latex example chm
aaf.character text html latex chm
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Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\annaffy.Rcheck\00_pkg_src\annaffy\chm\annaffy.chm
Compile time: 0 minutes, 0 seconds
53 Topics
306 Local links
5 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\annaffy.Rcheck\00_pkg_src\annaffy\chm\annaffy.chm, 47,394 bytes
Compression decreased file by 101,298 bytes.
adding MD5 sums
* DONE (annaffy)