CHECK report for Rredland on lemming

* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/Rredland.Rcheck' * using R version 2.4.0 alpha (2006-09-10 r39242) * checking for file 'Rredland/DESCRIPTION' ... OK * this is package 'Rredland' version '1.1.3' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Rredland' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... WARNING Found the following non-empty subdirectories of 'inst' also used by R: libs It is recommended not to interfere with package subdirectories used by R. * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... WARNING Loading required package: methods Loading required package: graph Loading required package: Ruuid Error in inherits(x, "factor") : could not find function "installed.packages" Error: .onLoad failed in 'loadNamespace' for 'Ruuid' Error: package 'Ruuid' could not be loaded Execution halted It looks like this package (or one of its dependent packages) has an unstated dependence on a standard package. All dependencies must be declared in DESCRIPTION. See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking whether the name space can be loaded with stated dependencies ... WARNING Error in .asEnvironmentPackage(where) : Package 'methods' is not loaded Error: unable to load R code in package 'Ruuid' Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented data sets: EMAPdf gordb All user-level objects in a package should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... WARNING Non-portable flags in variable 'PKG_CFLAGS': -Wall * checking for portable use of $BLAS_LIBS ... OK * creating Rredland-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating Rredland-manual.tex ... OK * checking Rredland-manual.tex ... OK WARNING: There were 5 warnings, see D:/biocbld/1.9d/Rpacks/Rredland.Rcheck/00check.log for details

installing R.css in D:/biocbld/1.9d/Rpacks/Rredland.Rcheck ---------- Making package Rredland ------------ ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making Rredl.d from Rredl.c gcc -DWIN32 -I../redlDev/include -Id:/biocbld/1.9d/R/include -Wall -O2 -std=gnu99 -c Rredl.c -o Rredl.o In file included from ../redlDev/include/redland.h:38, from Rredl.c:2: ../redlDev/include/raptor.h:57:1: warning: "RAPTOR_API" redefined ../redlDev/include/raptor.h:50:1: warning: this is the location of the previous definition In file included from ../redlDev/include/redland.h:40, from Rredl.c:2: ../redlDev/include/rasqal.h:53:1: warning: "RASQAL_API" redefined ../redlDev/include/rasqal.h:47:1: warning: this is the location of the previous definition In file included from ../redlDev/include/redland.h:42, from Rredl.c:2: ../redlDev/include/librdf.h:51:1: warning: "REDLAND_API" redefined ../redlDev/include/librdf.h:44:1: warning: this is the location of the previous definition Rredl.c: In function `get_rdfnode_ref': Rredl.c:314: warning: 'node' might be used uninitialized in this function windres --include-dir d:/biocbld/1.9d/R/include -i Rredland_res.rc -o Rredland_res.o gcc -shared -s -o Rredland.dll Rredland.def Rredl.o Rredland_res.o -Ld:/biocbld/1.9d/R/bin -L../inst/libs -lrdf -ldb43 -lrasqal -lraptor -lxml2 -lcurl -lR ... DLL made installing DLL installing R files save image Loading required package: graph Loading required package: Ruuid installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'Rredland' Formats: text html latex example chm cleanXSDT text html latex example chm getProperties text html latex example chm makeRedlURI text html latex example chm readRDF text html latex example chm redlModel-class text html latex example chm redlWorld-class text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\1.9d\Rpacks\Rredland.Rcheck\00_pkg_src\Rredland\chm\Rredland.chm Compile time: 0 minutes, 0 seconds 7 Topics 54 Local links 0 Internet links 1 Graphic Created d:\biocbld\1.9d\Rpacks\Rredland.Rcheck\00_pkg_src\Rredland\chm\Rredland.chm, 24,287 bytes Compression decreased file by 11,674 bytes. adding MD5 sums * DONE (Rredland)

Package 169/205	OS	Arch	BUILD	CHECK	BUILD BIN
Rredland 1.1.3 VJ Carey	Linux (SUSE 9.2)	x86_64	OK	WARNINGS
	Linux (SUSE 9.2)	i686	OK	ERROR
	Solaris 2.9	sparc	ERROR	skipped
	Linux (SUSE 10.0)	x86_64	OK	WARNINGS
	Windows Server 2003	x86_64	OK	[ WARNINGS ]	OK
	Windows XP	i686	OK	WARNINGS	skipped
	Mac OS X (10.4.6)	i686	ERROR	skipped

Rredland

1.1.3

Command output