Package: MergeMaid

Version: 2.5.0

Command: D:\biocbld\1.9d\R\bin\R.exe CMD check MergeMaid_2.5.0.tar.gz

RetCode: 0

Time: 221.3 seconds

Status: WARNINGS

CheckDir: MergeMaid.Rcheck

Warnings: 2

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/MergeMaid.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'MergeMaid/DESCRIPTION' ... OK
* this is package 'MergeMaid' version '2.5.0'
* checking package dependencies ... WARNING
package 'methods' is used but not declared
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'MergeMaid' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic 'exprs<-' and siglist 'mergeExpressionSet,ANY'
  generic 'geneNames<-' and siglist 'mergeExpressionSet,ANY'
  generic 'notes<-' and siglist 'mergeExpressionSet,ANY'
  generic 'phenoData<-' and siglist 'mergeExpressionSet,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating MergeMaid-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MergeMaid-manual.tex ... OK
* checking MergeMaid-manual.tex ... OK

WARNING: There were 2 warnings, see
  D:/biocbld/1.9d/Rpacks/MergeMaid.Rcheck/00check.log
for details

installing R.css in D:/biocbld/1.9d/Rpacks/MergeMaid.Rcheck


---------- Making package MergeMaid ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'MergeMaid'
     Formats: text html latex example chm 
  class.mergeCoeff                  text    html    latex   example chm
  class.mergeCor                    text    html    latex   example chm
  class.mergeExpressionSet          text    html    latex   example chm
  intCor                            text    html    latex   example chm
  intcorDens                        text    html    latex   example chm
  intersection                      text    html    latex   example chm
  mergeData                         text    html    latex           chm
  mergeExprs                        text    html    latex   example chm
  modelOutcome                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\MergeMaid.Rcheck\00_pkg_src\MergeMaid\chm\MergeMaid.chm


Compile time: 0 minutes, 0 seconds
10	Topics
90	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\MergeMaid.Rcheck\00_pkg_src\MergeMaid\chm\MergeMaid.chm, 29,398 bytes
Compression decreased file by 25,689 bytes.
  preparing package MergeMaid for lazy loading
Loading required package: survival

Loading required package: splines

Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: MASS

  adding MD5 sums

* DONE (MergeMaid)