Package: EBarrays

Version: 1.5.0

Command: D:\biocbld\1.9d\R\bin\R.exe CMD check EBarrays_1.5.0.tar.gz

RetCode: 0

Time: 178.9 seconds

Status: WARNINGS

CheckDir: EBarrays.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/EBarrays.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'EBarrays/DESCRIPTION' ... OK
* this is package 'EBarrays' version '1.5.0'
* checking package dependencies ... WARNING
package 'methods' is used but not declared
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'EBarrays' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBarrays-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/d/biocbld/1.9d/Rpacks/EBarrays.Rcheck/tests'
  Running 'test.R'
make[1]: Leaving directory `/cygdrive/d/biocbld/1.9d/Rpacks/EBarrays.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBarrays-manual.tex ... OK
* checking EBarrays-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/1.9d/Rpacks/EBarrays.Rcheck/00check.log
for details

installing R.css in D:/biocbld/1.9d/Rpacks/EBarrays.Rcheck


---------- Making package EBarrays ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making ebarrays.d from ebarrays.c
gcc   -Id:/biocbld/1.9d/R/include  -Wall -O2 -std=gnu99   -c ebarrays.c -o ebarrays.o
windres --include-dir d:/biocbld/1.9d/R/include  -i EBarrays_res.rc -o EBarrays_res.o
gcc  -shared -s  -o EBarrays.dll EBarrays.def ebarrays.o EBarrays_res.o  -Ld:/biocbld/1.9d/R/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice

[1] "ebarraysFamily"
[1] "ebarraysPatterns"
[1] "show"
[1] "show"
[1] "ebarraysEmFit"
[1] "show"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "postprob"
[1] "ebarraysPostProb"
[1] "show"
[1] "postprob"
[1] "postprob"
  installing demos
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'EBarrays'
     Formats: text html latex example chm 
  ebarraysFamily-class              text    html    latex   example chm
  ebplots                           text    html    latex   example chm
  emfit                             text    html    latex   example chm
  gould                             text    html    latex   example chm
  postprob                          text    html    latex           chm
  utilities                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\EBarrays.Rcheck\00_pkg_src\EBarrays\chm\EBarrays.chm


Compile time: 0 minutes, 0 seconds
7	Topics
48	Local links
1	Internet link
1	Graphic


Created d:\biocbld\1.9d\Rpacks\EBarrays.Rcheck\00_pkg_src\EBarrays\chm\EBarrays.chm, 28,451 bytes
Compression decreased file by 8,192 bytes.
  preparing package EBarrays for lazy loading
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice

  adding MD5 sums

* DONE (EBarrays)