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Package 36/205OSArchBUILDCHECKBUILD BIN

BSgenome

1.1.2

H. Pages		Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK [ OK ] OK 
Windows XP i686 OK  OK skipped
Mac OS X (10.4.6) i686 OK  OK 
Package: BSgenome
Version: 1.1.2
Command: D:\biocbld\1.9d\R\bin\R.exe CMD check BSgenome_1.1.2.tar.gz
RetCode: 0
Time: 39.5 seconds
Status: OK
CheckDir: BSgenome.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/BSgenome.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.1.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex ... OK

BSgenome.Rcheck/00install.out:

installing R.css in D:/biocbld/1.9d/Rpacks/BSgenome.Rcheck


---------- Making package BSgenome ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: Biostrings

  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'BSgenome'
     Formats: text html latex example chm 
  BSgenome-class                    text    html    latex   example chm
  buildDataFiles                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm


Compile time: 0 minutes, 0 seconds
3	Topics
10	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm, 17,007 bytes
Compression increased file by 5,765 bytes.
  adding MD5 sums

* DONE (BSgenome)