Package: macat

Version: 1.7.2

Command: /home/biocbuild/1.9d/R/bin/R CMD check macat_1.7.2.tar.gz

RetCode: 0

Time: 268.9 seconds

Status: WARNINGS

CheckDir: macat.Rcheck

Warnings: 2

* checking for working latex ... OK
* using log directory '/home/biocbuild/1.9d/Rpacks/macat.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'macat/DESCRIPTION' ... OK
* this is package 'macat' version '1.7.2'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  mydatapkg
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'macat' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating macat-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
* Installing *source* package 'stjudem' ...
** R
** data
** help
 >>> Building/Updating help pages for package 'stjudem'
     Formats: text html latex example 
  stjude                            text    html    latex   example
** building package indices ...
* DONE (stjudem)
* creating macat-manual.tex ... OK
* checking macat-manual.tex ... OK

WARNING: There were 2 warnings, see
  /home/biocbuild/1.9d/Rpacks/macat.Rcheck/00check.log
for details

* Installing *source* package 'macat' ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: annotate

** help
 >>> Building/Updating help pages for package 'macat'
     Formats: text html latex example 
  buildMACAT                        text    html    latex   example
  compute.sliding                   text    html    latex   example
  discreteKernelize                 text    html    latex   example
  discretize                        text    html    latex
  discretize.tscores                text    html    latex   example
  discretizeAll                     text    html    latex   example
  evalScoring                       text    html    latex   example
  evaluateParameters                text    html    latex   example
  get.results                       text    html    latex   example
  html                              text    html    latex
  kernelize                         text    html    latex   example
  kernelizeAll                      text    html    latex   example
  kernelizeToPython                 text    html    latex   example
  kernels                           text    html    latex   example
  loaddatapkg                       text    html    latex   example
  macat-internal                    text    html    latex
  plot.MACATevalScoring             text    html    latex   example
  preprocessedLoader                text    html    latex   example
  pythondata                        text    html    latex   example
  scoring                           text    html    latex   example
  stjd                              text    html    latex   example
** building package indices ...
* DONE (macat)